miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10795 5' -58.8 NC_002794.1 + 195232 0.68 0.763782
Target:  5'- ---aGCCCGCGCGgcguCACCAgcacCGACCa -3'
miRNA:   3'- uaggUGGGCGCGC----GUGGUacu-GCUGG- -5'
10795 5' -58.8 NC_002794.1 + 194862 0.67 0.816424
Target:  5'- cGUCUGCCCGCGcCGCGCgAUGcACaGGUCg -3'
miRNA:   3'- -UAGGUGGGCGC-GCGUGgUAC-UG-CUGG- -5'
10795 5' -58.8 NC_002794.1 + 194739 0.67 0.78185
Target:  5'- cUCCACgcaCCGCuGCaGCACCcacGGCGACUg -3'
miRNA:   3'- uAGGUG---GGCG-CG-CGUGGua-CUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 194488 0.68 0.763782
Target:  5'- cUCCAgCCGCcccucCGCGCCcgGcccGCGGCCc -3'
miRNA:   3'- uAGGUgGGCGc----GCGUGGuaC---UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 194116 0.67 0.78185
Target:  5'- -gCgGCaCCGCGCGCACgGcUGaggcaGCGGCCg -3'
miRNA:   3'- uaGgUG-GGCGCGCGUGgU-AC-----UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 193739 0.67 0.799418
Target:  5'- -gCCGCCCGCG-GCuuCGgcgaGCGACCg -3'
miRNA:   3'- uaGGUGGGCGCgCGugGUac--UGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 193574 0.66 0.848509
Target:  5'- uUCCAUCa-CGCGC-CgGUGGCGGCUc -3'
miRNA:   3'- uAGGUGGgcGCGCGuGgUACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 193514 0.67 0.78185
Target:  5'- cUCCACcgCCGCGCGCACCuuccGCG-Cg -3'
miRNA:   3'- uAGGUG--GGCGCGCGUGGuac-UGCuGg -5'
10795 5' -58.8 NC_002794.1 + 193396 0.67 0.824696
Target:  5'- cGUCCGCCuCGCGCuCGCCuccGCcGCCg -3'
miRNA:   3'- -UAGGUGG-GCGCGcGUGGuacUGcUGG- -5'
10795 5' -58.8 NC_002794.1 + 193303 0.69 0.707233
Target:  5'- cGUCCGCuCCGCGcCGCACgCA--GCGcCCg -3'
miRNA:   3'- -UAGGUG-GGCGC-GCGUG-GUacUGCuGG- -5'
10795 5' -58.8 NC_002794.1 + 193173 0.69 0.668238
Target:  5'- -aCCAgCCCGCGcCGCGCCA--GCGuguCCa -3'
miRNA:   3'- uaGGU-GGGCGC-GCGUGGUacUGCu--GG- -5'
10795 5' -58.8 NC_002794.1 + 192649 0.66 0.840746
Target:  5'- -gCCGCgCCGcCGCGCGCUcgcGCGACUc -3'
miRNA:   3'- uaGGUG-GGC-GCGCGUGGuacUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 192614 0.68 0.735885
Target:  5'- cUCCGCCagGUGCGgACagucgGGCGGCCg -3'
miRNA:   3'- uAGGUGGg-CGCGCgUGgua--CUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 190204 0.72 0.540843
Target:  5'- cUCCAgCgCCGCGCGCACCcgccgGGCGcuCCg -3'
miRNA:   3'- uAGGU-G-GGCGCGCGUGGua---CUGCu-GG- -5'
10795 5' -58.8 NC_002794.1 + 190116 0.68 0.745279
Target:  5'- cGUCCGCgccgaagcgguCCGCGCGCcgauACCAcgcguacugcUGGCGGCg -3'
miRNA:   3'- -UAGGUG-----------GGCGCGCG----UGGU----------ACUGCUGg -5'
10795 5' -58.8 NC_002794.1 + 190006 0.68 0.772875
Target:  5'- cAUCgGCCCGUcCGgGuCCAUcGGCGGCCg -3'
miRNA:   3'- -UAGgUGGGCGcGCgU-GGUA-CUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 189922 0.72 0.52178
Target:  5'- -aCCGCCCGCuCGC-CC--GACGGCCg -3'
miRNA:   3'- uaGGUGGGCGcGCGuGGuaCUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 189226 0.7 0.658402
Target:  5'- -aCCACCCGCuC-CGUCGUGACGAUCa -3'
miRNA:   3'- uaGGUGGGCGcGcGUGGUACUGCUGG- -5'
10795 5' -58.8 NC_002794.1 + 188338 0.68 0.735885
Target:  5'- -gCCGCCgGCG-GCGCCGUcGCGcCCg -3'
miRNA:   3'- uaGGUGGgCGCgCGUGGUAcUGCuGG- -5'
10795 5' -58.8 NC_002794.1 + 187912 0.66 0.832806
Target:  5'- -cUCGCCCGcCGgGCcCCGccGCGACCg -3'
miRNA:   3'- uaGGUGGGC-GCgCGuGGUacUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.