Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10796 | 3' | -56.2 | NC_002794.1 | + | 76630 | 1.07 | 0.004838 |
Target: 5'- uUAGACGUGGCCGUGGCGAACGUCUGAu -3' miRNA: 3'- -AUCUGCACCGGCACCGCUUGCAGACU- -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 30402 | 0.76 | 0.424416 |
Target: 5'- -cGACGUGauGCCGUGGuCGAACGUCg-- -3' miRNA: 3'- auCUGCAC--CGGCACC-GCUUGCAGacu -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 127952 | 0.71 | 0.715093 |
Target: 5'- gUGGACGUGGaCGUGGCuacGAGCGaccCUGGu -3' miRNA: 3'- -AUCUGCACCgGCACCG---CUUGCa--GACU- -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 14589 | 0.71 | 0.72485 |
Target: 5'- --aGCG-GGCCGUGGCGAGCG-Cg-- -3' miRNA: 3'- aucUGCaCCGGCACCGCUUGCaGacu -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 143411 | 0.7 | 0.74412 |
Target: 5'- -cGGCGcgGGCCG-GGCGAAgGUCcgGAa -3' miRNA: 3'- auCUGCa-CCGGCaCCGCUUgCAGa-CU- -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 175730 | 0.69 | 0.816716 |
Target: 5'- aGGAgCGUGGCCGUGagaGCGA--GUCUGu -3' miRNA: 3'- aUCU-GCACCGGCAC---CGCUugCAGACu -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 66861 | 0.69 | 0.816716 |
Target: 5'- -cGGCGaGGCCGcGGCGuGCGgCUGAg -3' miRNA: 3'- auCUGCaCCGGCaCCGCuUGCaGACU- -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 86936 | 0.69 | 0.825145 |
Target: 5'- cAGGCGgGGCgGgauccGGCGAGCGUCg-- -3' miRNA: 3'- aUCUGCaCCGgCa----CCGCUUGCAGacu -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 107623 | 0.69 | 0.833405 |
Target: 5'- gGGACgGUGGCgGUGacgaagaggagcGCGAACGUCgcgagGAg -3' miRNA: 3'- aUCUG-CACCGgCAC------------CGCUUGCAGa----CU- -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 94487 | 0.68 | 0.841488 |
Target: 5'- cGGACGcggccgcgGGCCGUGGCGGggaugaauACGUUgcaGAg -3' miRNA: 3'- aUCUGCa-------CCGGCACCGCU--------UGCAGa--CU- -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 43621 | 0.68 | 0.849386 |
Target: 5'- aGGACGUGGCCGccaggagcUGGUGGaacACG-CUGc -3' miRNA: 3'- aUCUGCACCGGC--------ACCGCU---UGCaGACu -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 109536 | 0.67 | 0.879013 |
Target: 5'- -cGGCGUcgGGCCG-GGCGGACcgGUCUa- -3' miRNA: 3'- auCUGCA--CCGGCaCCGCUUG--CAGAcu -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 104486 | 0.67 | 0.905244 |
Target: 5'- cGGGCGgccacggcGGCCGggucgGGCGAgaACGggCUGAg -3' miRNA: 3'- aUCUGCa-------CCGGCa----CCGCU--UGCa-GACU- -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 143102 | 0.67 | 0.90767 |
Target: 5'- -cGGCGUguuccagccccgcucGGCCGUGGCGcAgGUCUcGGg -3' miRNA: 3'- auCUGCA---------------CCGGCACCGCuUgCAGA-CU- -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 35506 | 0.67 | 0.911241 |
Target: 5'- aGGugGUGGCCGccGUGcccAGCGUCUa- -3' miRNA: 3'- aUCugCACCGGCacCGC---UUGCAGAcu -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 113873 | 0.67 | 0.911241 |
Target: 5'- cAGGCGcgcucGGCCGcGGCGcGCGUCg-- -3' miRNA: 3'- aUCUGCa----CCGGCaCCGCuUGCAGacu -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 23102 | 0.67 | 0.911241 |
Target: 5'- cGGACGUGGCgucccCGuUGGCcuGCGUgUGAg -3' miRNA: 3'- aUCUGCACCG-----GC-ACCGcuUGCAgACU- -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 102413 | 0.66 | 0.916444 |
Target: 5'- -cGACGcGGCCGUGGcCGAggccgccacgcgcAUGUCcGAg -3' miRNA: 3'- auCUGCaCCGGCACC-GCU-------------UGCAGaCU- -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 147745 | 0.66 | 0.927857 |
Target: 5'- -uGACGUGGCCGcUGGaGAGuuuUCUGAu -3' miRNA: 3'- auCUGCACCGGC-ACCgCUUgc-AGACU- -5' |
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10796 | 3' | -56.2 | NC_002794.1 | + | 118257 | 0.66 | 0.932932 |
Target: 5'- cUGGAgGUcGGCCGgGGCGGcggcgccgGCGUCgggGAc -3' miRNA: 3'- -AUCUgCA-CCGGCaCCGCU--------UGCAGa--CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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