miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10796 5' -53.8 NC_002794.1 + 134105 0.66 0.984397
Target:  5'- --cCGGAcGACGgacccccucCGuCCGACGGCGCGGc -3'
miRNA:   3'- gaaGUCU-UUGU---------GC-GGCUGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 36368 0.66 0.984397
Target:  5'- --cCGGguGCGCGCCcGCGGCGaagcGGu -3'
miRNA:   3'- gaaGUCuuUGUGCGGcUGCCGCgu--CC- -5'
10796 5' -53.8 NC_002794.1 + 114663 0.66 0.984397
Target:  5'- gUUCGcgcGCGCGCCGGuacuCGGacCGCAGGg -3'
miRNA:   3'- gAAGUcuuUGUGCGGCU----GCC--GCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 71290 0.66 0.984397
Target:  5'- --aCGGAAAauaGCCGcCGGCGCGcucGGg -3'
miRNA:   3'- gaaGUCUUUgugCGGCuGCCGCGU---CC- -5'
10796 5' -53.8 NC_002794.1 + 101816 0.66 0.984397
Target:  5'- --gCAGcgGCGCGCCGugcgcgaGGCcauGCGGGa -3'
miRNA:   3'- gaaGUCuuUGUGCGGCug-----CCG---CGUCC- -5'
10796 5' -53.8 NC_002794.1 + 187473 0.66 0.984218
Target:  5'- -cUCGGc-GCGCGCCGggccgaggacgagGCcGCGCAGGc -3'
miRNA:   3'- gaAGUCuuUGUGCGGC-------------UGcCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 26088 0.66 0.984218
Target:  5'- ----cGggGCAgCGCCGACGGCcccggcgaucgccGUGGGc -3'
miRNA:   3'- gaaguCuuUGU-GCGGCUGCCG-------------CGUCC- -5'
10796 5' -53.8 NC_002794.1 + 116436 0.66 0.982531
Target:  5'- -gUCAGG---ACGCCGACGGUgGCGa- -3'
miRNA:   3'- gaAGUCUuugUGCGGCUGCCG-CGUcc -5'
10796 5' -53.8 NC_002794.1 + 60492 0.66 0.982531
Target:  5'- --aCGGAGAUccaguacgucuGCGUCGACGGCacGgAGGg -3'
miRNA:   3'- gaaGUCUUUG-----------UGCGGCUGCCG--CgUCC- -5'
10796 5' -53.8 NC_002794.1 + 117691 0.66 0.982531
Target:  5'- --gUAGGccucGCACGCCgcGACGGCGUGGc -3'
miRNA:   3'- gaaGUCUu---UGUGCGG--CUGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 108396 0.66 0.982531
Target:  5'- --gCGGAGGCucCGgCGGCGGCGCc-- -3'
miRNA:   3'- gaaGUCUUUGu-GCgGCUGCCGCGucc -5'
10796 5' -53.8 NC_002794.1 + 96879 0.66 0.982531
Target:  5'- --aCGGAcgGugGCGCU-ACGGgGCAGGc -3'
miRNA:   3'- gaaGUCU--UugUGCGGcUGCCgCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 118377 0.66 0.982531
Target:  5'- --gUAGAGAUACuGCCGcucgGCGGCGCu-- -3'
miRNA:   3'- gaaGUCUUUGUG-CGGC----UGCCGCGucc -5'
10796 5' -53.8 NC_002794.1 + 124125 0.66 0.982531
Target:  5'- -cUCGaGAGCGCGUCucCGGCGCccGGGa -3'
miRNA:   3'- gaAGUcUUUGUGCGGcuGCCGCG--UCC- -5'
10796 5' -53.8 NC_002794.1 + 142205 0.66 0.982531
Target:  5'- ---gGGAAGCggcgGCGgcagCGGCGGUGCGGGg -3'
miRNA:   3'- gaagUCUUUG----UGCg---GCUGCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 149270 0.66 0.982531
Target:  5'- -cUCGucc-C-CGCCGGCGGCGCGGcGg -3'
miRNA:   3'- gaAGUcuuuGuGCGGCUGCCGCGUC-C- -5'
10796 5' -53.8 NC_002794.1 + 141775 0.66 0.982531
Target:  5'- aUUCcGAcgacgAGC-CGuCCGACgGGCGCGGGu -3'
miRNA:   3'- gAAGuCU-----UUGuGC-GGCUG-CCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 38083 0.66 0.982336
Target:  5'- -cUCGGAcacggucAGCGCGaCCGGCGugaagaCGCGGGa -3'
miRNA:   3'- gaAGUCU-------UUGUGC-GGCUGCc-----GCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 131894 0.66 0.980502
Target:  5'- -cUCGGucGCGCGCgGGCacGUGUAGGg -3'
miRNA:   3'- gaAGUCuuUGUGCGgCUGc-CGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 118287 0.66 0.980502
Target:  5'- -gUCGGGGAcCGCGCCG--GGCGCGu- -3'
miRNA:   3'- gaAGUCUUU-GUGCGGCugCCGCGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.