miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10796 5' -53.8 NC_002794.1 + 76667 1.1 0.005923
Target:  5'- gCUUCAGAAACACGCCGACGGCGCAGGc -3'
miRNA:   3'- -GAAGUCUUUGUGCGGCUGCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 126263 0.81 0.337674
Target:  5'- -gUCGGcgGCugGCUGGCGGCGCuGGg -3'
miRNA:   3'- gaAGUCuuUGugCGGCUGCCGCGuCC- -5'
10796 5' -53.8 NC_002794.1 + 146175 0.79 0.454314
Target:  5'- -aUCAGGAGCGCuucgagGCCGA-GGCGCGGGc -3'
miRNA:   3'- gaAGUCUUUGUG------CGGCUgCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 111314 0.78 0.463462
Target:  5'- --aCGGAGACGCcggGCCaGCGGCGCGGGc -3'
miRNA:   3'- gaaGUCUUUGUG---CGGcUGCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 139725 0.78 0.48204
Target:  5'- -aUCAGGAacggcaGCACGCCGACGGUcaaCAGGu -3'
miRNA:   3'- gaAGUCUU------UGUGCGGCUGCCGc--GUCC- -5'
10796 5' -53.8 NC_002794.1 + 183182 0.77 0.527029
Target:  5'- -gUCGGGGACcgagacgcgccgccACGCCGGCGGCGCGu- -3'
miRNA:   3'- gaAGUCUUUG--------------UGCGGCUGCCGCGUcc -5'
10796 5' -53.8 NC_002794.1 + 153590 0.77 0.539757
Target:  5'- --cCGGGuccAACACGCCcuggaagaGACGGCGCGGGc -3'
miRNA:   3'- gaaGUCU---UUGUGCGG--------CUGCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 112332 0.77 0.559534
Target:  5'- ---gGGGAGCGCGCCGgccgGCGGCGCcGGc -3'
miRNA:   3'- gaagUCUUUGUGCGGC----UGCCGCGuCC- -5'
10796 5' -53.8 NC_002794.1 + 21921 0.76 0.569499
Target:  5'- --gCGGAGACgACGgCGGCGGCGCGGc -3'
miRNA:   3'- gaaGUCUUUG-UGCgGCUGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 141424 0.76 0.618831
Target:  5'- -cUCGGggGCggcggggGCGCCGGgGGCGcCGGGa -3'
miRNA:   3'- gaAGUCuuUG-------UGCGGCUgCCGC-GUCC- -5'
10796 5' -53.8 NC_002794.1 + 99949 0.75 0.629968
Target:  5'- gUUCGGccGGAC-CGCCGACGGCGcCAGu -3'
miRNA:   3'- gAAGUC--UUUGuGCGGCUGCCGC-GUCc -5'
10796 5' -53.8 NC_002794.1 + 192236 0.75 0.640094
Target:  5'- -aUCGGcgcuGCcguCGCCGACGGCGCGGu -3'
miRNA:   3'- gaAGUCuu--UGu--GCGGCUGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 22281 0.75 0.650214
Target:  5'- --gCAGAGACACGCCGACGGacaaaaCGGa -3'
miRNA:   3'- gaaGUCUUUGUGCGGCUGCCgc----GUCc -5'
10796 5' -53.8 NC_002794.1 + 142390 0.75 0.669397
Target:  5'- --gCGGAGACggcggugcaggcgGCGUCGGCGGCGCcGGg -3'
miRNA:   3'- gaaGUCUUUG-------------UGCGGCUGCCGCGuCC- -5'
10796 5' -53.8 NC_002794.1 + 184639 0.74 0.690472
Target:  5'- -aUCGGcguCGCGUCGGCGGCGUAGc -3'
miRNA:   3'- gaAGUCuuuGUGCGGCUGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 60630 0.74 0.690472
Target:  5'- --aCGGGcgGACccgGCGCCGGCGGCGCcGGc -3'
miRNA:   3'- gaaGUCU--UUG---UGCGGCUGCCGCGuCC- -5'
10796 5' -53.8 NC_002794.1 + 106789 0.74 0.71035
Target:  5'- --gCAGAu-CAaGCCGuCGGCGCAGGg -3'
miRNA:   3'- gaaGUCUuuGUgCGGCuGCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 110620 0.74 0.720195
Target:  5'- --gCGGGAGCcgcgGCGCCG-CGGCgGCGGGg -3'
miRNA:   3'- gaaGUCUUUG----UGCGGCuGCCG-CGUCC- -5'
10796 5' -53.8 NC_002794.1 + 119502 0.73 0.729967
Target:  5'- -cUCGGGGu--CGUCGGCGGCGCGGa -3'
miRNA:   3'- gaAGUCUUuguGCGGCUGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 40375 0.73 0.739656
Target:  5'- uCUUCAGAcgGGCAacgccaccacuCGCCGAuuCGGuCGCGGGg -3'
miRNA:   3'- -GAAGUCU--UUGU-----------GCGGCU--GCC-GCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.