miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10796 5' -53.8 NC_002794.1 + 180724 0.73 0.739656
Target:  5'- gUUCAGAGACGCGCgGACGaCGCc-- -3'
miRNA:   3'- gAAGUCUUUGUGCGgCUGCcGCGucc -5'
10796 5' -53.8 NC_002794.1 + 40375 0.73 0.739656
Target:  5'- uCUUCAGAcgGGCAacgccaccacuCGCCGAuuCGGuCGCGGGg -3'
miRNA:   3'- -GAAGUCU--UUGU-----------GCGGCU--GCC-GCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 114957 0.73 0.749253
Target:  5'- gUUguGGGAC-CGCCGcagcagcuCGGCGCAGGc -3'
miRNA:   3'- gAAguCUUUGuGCGGCu-------GCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 116949 0.73 0.75875
Target:  5'- --cCGGcgGCgGCGUCGGCgGGCGCAGGa -3'
miRNA:   3'- gaaGUCuuUG-UGCGGCUG-CCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 106937 0.73 0.768136
Target:  5'- ---aAGAcGCGgGCCGGCGGCGCcuGGa -3'
miRNA:   3'- gaagUCUuUGUgCGGCUGCCGCGu-CC- -5'
10796 5' -53.8 NC_002794.1 + 34743 0.73 0.768136
Target:  5'- --gCAG-AGCGCG-CGACGGCGCGGu -3'
miRNA:   3'- gaaGUCuUUGUGCgGCUGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 185779 0.72 0.786545
Target:  5'- ----cGucACACGUCGGcCGGCGCGGGg -3'
miRNA:   3'- gaaguCuuUGUGCGGCU-GCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 70323 0.72 0.795551
Target:  5'- gCUUCGcccgcGAAgACGCCGACGGC-CGGGc -3'
miRNA:   3'- -GAAGUc----UUUgUGCGGCUGCCGcGUCC- -5'
10796 5' -53.8 NC_002794.1 + 49604 0.72 0.795551
Target:  5'- -aUCGGcGACggcggGCGCCGGCGGCGCc-- -3'
miRNA:   3'- gaAGUCuUUG-----UGCGGCUGCCGCGucc -5'
10796 5' -53.8 NC_002794.1 + 131186 0.72 0.804411
Target:  5'- --cCGGAGACagcacgGCGCCGggGCGGCGCcGGu -3'
miRNA:   3'- gaaGUCUUUG------UGCGGC--UGCCGCGuCC- -5'
10796 5' -53.8 NC_002794.1 + 184556 0.72 0.804411
Target:  5'- uCUUCGGAcgccucACGCGCCGccGCGGCgGCGGcGg -3'
miRNA:   3'- -GAAGUCUu-----UGUGCGGC--UGCCG-CGUC-C- -5'
10796 5' -53.8 NC_002794.1 + 92427 0.72 0.804411
Target:  5'- --aCGGGcgagGACACGCUGGCcGUGCGGGg -3'
miRNA:   3'- gaaGUCU----UUGUGCGGCUGcCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 19522 0.72 0.821666
Target:  5'- -cUCGGA---GCGCCGgcGCGGCGCGGc -3'
miRNA:   3'- gaAGUCUuugUGCGGC--UGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 12208 0.72 0.821666
Target:  5'- -cUCGGAcgugccGGCgGCGUCGGCGGCGCcGGc -3'
miRNA:   3'- gaAGUCU------UUG-UGCGGCUGCCGCGuCC- -5'
10796 5' -53.8 NC_002794.1 + 125333 0.72 0.821666
Target:  5'- ----cGGAGCGCGCC-ACGGCGCAccGGc -3'
miRNA:   3'- gaaguCUUUGUGCGGcUGCCGCGU--CC- -5'
10796 5' -53.8 NC_002794.1 + 79358 0.71 0.830044
Target:  5'- --gCAGAgccugucgGACACGCUGGacgaGGCGCAGa -3'
miRNA:   3'- gaaGUCU--------UUGUGCGGCUg---CCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 93997 0.71 0.830044
Target:  5'- --gCGGAcGCcgGCGCCGGCGGCgggccgGCGGGu -3'
miRNA:   3'- gaaGUCUuUG--UGCGGCUGCCG------CGUCC- -5'
10796 5' -53.8 NC_002794.1 + 112106 0.71 0.838246
Target:  5'- --cCAG--GCGCGgccgggaCGACGGCGCGGGg -3'
miRNA:   3'- gaaGUCuuUGUGCg------GCUGCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 186832 0.71 0.846264
Target:  5'- --aCGGGAAgGCGcCCGACaGcGCGCGGGc -3'
miRNA:   3'- gaaGUCUUUgUGC-GGCUG-C-CGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 21366 0.71 0.854092
Target:  5'- --cCAGAGACGCGgCGGCGGcCGCc-- -3'
miRNA:   3'- gaaGUCUUUGUGCgGCUGCC-GCGucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.