miRNA display CGI


Results 21 - 40 of 198 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10796 5' -53.8 NC_002794.1 + 90925 0.66 0.980502
Target:  5'- --aCGGAGGacCACGgCGACGuGgGCGGGc -3'
miRNA:   3'- gaaGUCUUU--GUGCgGCUGC-CgCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 98918 0.66 0.980502
Target:  5'- aCUUCAuGAGCGgGCUGggcGCGGC-CGGGa -3'
miRNA:   3'- -GAAGUcUUUGUgCGGC---UGCCGcGUCC- -5'
10796 5' -53.8 NC_002794.1 + 54837 0.66 0.980502
Target:  5'- gUUCGGcgGCacccaACGCCcguaGGcCGGCGCGGGc -3'
miRNA:   3'- gAAGUCuuUG-----UGCGG----CU-GCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 149822 0.66 0.980502
Target:  5'- -cUCGGGGACcCGagGACGG-GCGGGg -3'
miRNA:   3'- gaAGUCUUUGuGCggCUGCCgCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 118287 0.66 0.980502
Target:  5'- -gUCGGGGAcCGCGCCG--GGCGCGu- -3'
miRNA:   3'- gaAGUCUUU-GUGCGGCugCCGCGUcc -5'
10796 5' -53.8 NC_002794.1 + 131894 0.66 0.980502
Target:  5'- -cUCGGucGCGCGCgGGCacGUGUAGGg -3'
miRNA:   3'- gaAGUCuuUGUGCGgCUGc-CGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 187826 0.66 0.980502
Target:  5'- ----cGGAGCGCGCuCGGCucGGCGCgccgAGGg -3'
miRNA:   3'- gaaguCUUUGUGCG-GCUG--CCGCG----UCC- -5'
10796 5' -53.8 NC_002794.1 + 52743 0.66 0.98029
Target:  5'- --cCAGGAACcguucguaguaccGCGCCG-CGGCcCGGGc -3'
miRNA:   3'- gaaGUCUUUG-------------UGCGGCuGCCGcGUCC- -5'
10796 5' -53.8 NC_002794.1 + 111006 0.66 0.979203
Target:  5'- uCUUCAGGAACGuggucagcucccgguCGUCGugauccggcugGCGGUGCAGc -3'
miRNA:   3'- -GAAGUCUUUGU---------------GCGGC-----------UGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 36569 0.66 0.978302
Target:  5'- --gCAGAcACGCGCCGcCGa-GCAGGc -3'
miRNA:   3'- gaaGUCUuUGUGCGGCuGCcgCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 58377 0.66 0.978302
Target:  5'- aCUUCcaGGAGGCGCGCgGGCGccaGCuGCuGGa -3'
miRNA:   3'- -GAAG--UCUUUGUGCGgCUGC---CG-CGuCC- -5'
10796 5' -53.8 NC_002794.1 + 70904 0.66 0.978302
Target:  5'- -gUCGGuGAGCACGUCGGCcaGGCGaaAGGu -3'
miRNA:   3'- gaAGUC-UUUGUGCGGCUG--CCGCg-UCC- -5'
10796 5' -53.8 NC_002794.1 + 89657 0.66 0.978302
Target:  5'- gUUCGGggGaaggaaACGC--GCGGCGguGGg -3'
miRNA:   3'- gAAGUCuuUg-----UGCGgcUGCCGCguCC- -5'
10796 5' -53.8 NC_002794.1 + 115461 0.66 0.978302
Target:  5'- -aUCGGAGAgGCGggGACgcgGGUGCAGGu -3'
miRNA:   3'- gaAGUCUUUgUGCggCUG---CCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 135582 0.66 0.978302
Target:  5'- -aUCGGAAACGuCGCCGGgguccgucggguCGGaagcggaucgguCGCAGGu -3'
miRNA:   3'- gaAGUCUUUGU-GCGGCU------------GCC------------GCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 117860 0.66 0.978302
Target:  5'- --aCGGGggcuGGCGCGCCagggagcucagGAUGGUGUAGGu -3'
miRNA:   3'- gaaGUCU----UUGUGCGG-----------CUGCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 126387 0.66 0.975924
Target:  5'- --cCGGGGccuGCGCGgCGGCGuGCGCGGcGg -3'
miRNA:   3'- gaaGUCUU---UGUGCgGCUGC-CGCGUC-C- -5'
10796 5' -53.8 NC_002794.1 + 127592 0.66 0.975924
Target:  5'- uUUCAcucuGCGCgGCCGcugaGCGGCGCGGa -3'
miRNA:   3'- gAAGUcuu-UGUG-CGGC----UGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 4735 0.66 0.975924
Target:  5'- --cCAGGAACAUGaacaCGAUGGC-UAGGa -3'
miRNA:   3'- gaaGUCUUUGUGCg---GCUGCCGcGUCC- -5'
10796 5' -53.8 NC_002794.1 + 113157 0.66 0.975924
Target:  5'- -gUCAGcguguagcGCGCGCgGGCGGCgGCGGu -3'
miRNA:   3'- gaAGUCuu------UGUGCGgCUGCCG-CGUCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.