miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10796 5' -53.8 NC_002794.1 + 4735 0.66 0.975924
Target:  5'- --cCAGGAACAUGaacaCGAUGGC-UAGGa -3'
miRNA:   3'- gaaGUCUUUGUGCg---GCUGCCGcGUCC- -5'
10796 5' -53.8 NC_002794.1 + 127592 0.66 0.975924
Target:  5'- uUUCAcucuGCGCgGCCGcugaGCGGCGCGGa -3'
miRNA:   3'- gAAGUcuu-UGUG-CGGC----UGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 126387 0.66 0.975924
Target:  5'- --cCGGGGccuGCGCGgCGGCGuGCGCGGcGg -3'
miRNA:   3'- gaaGUCUU---UGUGCgGCUGC-CGCGUC-C- -5'
10796 5' -53.8 NC_002794.1 + 130137 0.66 0.975924
Target:  5'- -aUUAGAcgcuGCGCGgCG-CGaGCGCGGGa -3'
miRNA:   3'- gaAGUCUu---UGUGCgGCuGC-CGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 57102 0.66 0.975676
Target:  5'- -gUCAaGAACACgGCCGACGccauggaGCGCGGc -3'
miRNA:   3'- gaAGUcUUUGUG-CGGCUGC-------CGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 19453 0.67 0.97336
Target:  5'- --gCGGgcACgaGCGgCGGCGGCgGCGGGa -3'
miRNA:   3'- gaaGUCuuUG--UGCgGCUGCCG-CGUCC- -5'
10796 5' -53.8 NC_002794.1 + 93438 0.67 0.97336
Target:  5'- aCUUCAaGAAGCucaaGCuCGACGGCGUc-- -3'
miRNA:   3'- -GAAGU-CUUUGug--CG-GCUGCCGCGucc -5'
10796 5' -53.8 NC_002794.1 + 36941 0.67 0.97336
Target:  5'- ---gAGAAAgucCGCGUCGcGCGGCgGCAGGc -3'
miRNA:   3'- gaagUCUUU---GUGCGGC-UGCCG-CGUCC- -5'
10796 5' -53.8 NC_002794.1 + 102086 0.67 0.97336
Target:  5'- --gCGGGccGACGagcCGCCGcccACGGUGCGGGu -3'
miRNA:   3'- gaaGUCU--UUGU---GCGGC---UGCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 117659 0.67 0.97336
Target:  5'- ---aAGAGcgcCACGCgCGGCGGCGCGu- -3'
miRNA:   3'- gaagUCUUu--GUGCG-GCUGCCGCGUcc -5'
10796 5' -53.8 NC_002794.1 + 190352 0.67 0.97336
Target:  5'- -gUCAGGucguCG-GCCGcGCGGCGCAGcGg -3'
miRNA:   3'- gaAGUCUuu--GUgCGGC-UGCCGCGUC-C- -5'
10796 5' -53.8 NC_002794.1 + 125634 0.67 0.970604
Target:  5'- --gCAGAAAUGCGCCuaGCGGCGUu-- -3'
miRNA:   3'- gaaGUCUUUGUGCGGc-UGCCGCGucc -5'
10796 5' -53.8 NC_002794.1 + 148654 0.67 0.970604
Target:  5'- -cUCGGcuACGCGCCGACcgaGGaGCGGa -3'
miRNA:   3'- gaAGUCuuUGUGCGGCUG---CCgCGUCc -5'
10796 5' -53.8 NC_002794.1 + 12410 0.67 0.970604
Target:  5'- -------cGCACGCgGACGGCGCGc- -3'
miRNA:   3'- gaagucuuUGUGCGgCUGCCGCGUcc -5'
10796 5' -53.8 NC_002794.1 + 185740 0.67 0.970604
Target:  5'- --aCAGAcACACacacgcguccaGCCGcCGGCGCGGc -3'
miRNA:   3'- gaaGUCUuUGUG-----------CGGCuGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 136923 0.67 0.968856
Target:  5'- -aUCGGGAGCcccgaGuuGACGGCGCcgagauaguccccgcAGGg -3'
miRNA:   3'- gaAGUCUUUGug---CggCUGCCGCG---------------UCC- -5'
10796 5' -53.8 NC_002794.1 + 107053 0.67 0.968856
Target:  5'- -gUCGGAGgcggcgggcgcgGCGCcgccggcaugucggaGCCGACGG-GCGGGg -3'
miRNA:   3'- gaAGUCUU------------UGUG---------------CGGCUGCCgCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 81808 0.67 0.968856
Target:  5'- -cUCAGccGCGCGCaccgcaucccgcaaGaACGGUGCAGGu -3'
miRNA:   3'- gaAGUCuuUGUGCGg-------------C-UGCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 153121 0.67 0.96765
Target:  5'- aCUUCGGGuu--CGgUGGCGGCaGCGGGu -3'
miRNA:   3'- -GAAGUCUuuguGCgGCUGCCG-CGUCC- -5'
10796 5' -53.8 NC_002794.1 + 65895 0.67 0.96765
Target:  5'- cCUUCGucgcgucgacGAccuuGACcgucguCGCCGGCGGCGguGGc -3'
miRNA:   3'- -GAAGU----------CU----UUGu-----GCGGCUGCCGCguCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.