miRNA display CGI


Results 1 - 20 of 198 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10796 5' -53.8 NC_002794.1 + 3740 0.68 0.945457
Target:  5'- -aUCGcGAccgcAACGCGCgucaCGGCGGgGCGGGg -3'
miRNA:   3'- gaAGU-CU----UUGUGCG----GCUGCCgCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 4735 0.66 0.975924
Target:  5'- --cCAGGAACAUGaacaCGAUGGC-UAGGa -3'
miRNA:   3'- gaaGUCUUUGUGCg---GCUGCCGcGUCC- -5'
10796 5' -53.8 NC_002794.1 + 10865 0.66 0.980502
Target:  5'- -cUCGGAAGCcgaGCGUgaccgaCGACGG-GCGGGc -3'
miRNA:   3'- gaAGUCUUUG---UGCG------GCUGCCgCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 12208 0.72 0.821666
Target:  5'- -cUCGGAcgugccGGCgGCGUCGGCGGCGCcGGc -3'
miRNA:   3'- gaAGUCU------UUG-UGCGGCUGCCGCGuCC- -5'
10796 5' -53.8 NC_002794.1 + 12410 0.67 0.970604
Target:  5'- -------cGCACGCgGACGGCGCGc- -3'
miRNA:   3'- gaagucuuUGUGCGgCUGCCGCGUcc -5'
10796 5' -53.8 NC_002794.1 + 14280 0.7 0.88338
Target:  5'- gUUCGGcugGAGCgucaGCGUCGA-GGCGCGGGg -3'
miRNA:   3'- gAAGUC---UUUG----UGCGGCUgCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 14645 0.71 0.854092
Target:  5'- --aCGGAGACgccgGCGCCG-CGGCGUcGGu -3'
miRNA:   3'- gaaGUCUUUG----UGCGGCuGCCGCGuCC- -5'
10796 5' -53.8 NC_002794.1 + 14686 0.67 0.96765
Target:  5'- --gCGGucGCGCuGCUccuGACGGCGUGGGg -3'
miRNA:   3'- gaaGUCuuUGUG-CGG---CUGCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 17428 0.67 0.964492
Target:  5'- --gCGGucucCGCGCCGcCGGCGCucGGg -3'
miRNA:   3'- gaaGUCuuu-GUGCGGCuGCCGCGu-CC- -5'
10796 5' -53.8 NC_002794.1 + 19453 0.67 0.97336
Target:  5'- --gCGGgcACgaGCGgCGGCGGCgGCGGGa -3'
miRNA:   3'- gaaGUCuuUG--UGCgGCUGCCG-CGUCC- -5'
10796 5' -53.8 NC_002794.1 + 19522 0.72 0.821666
Target:  5'- -cUCGGA---GCGCCGgcGCGGCGCGGc -3'
miRNA:   3'- gaAGUCUuugUGCGGC--UGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 21366 0.71 0.854092
Target:  5'- --cCAGAGACGCGgCGGCGGcCGCc-- -3'
miRNA:   3'- gaaGUCUUUGUGCgGCUGCC-GCGucc -5'
10796 5' -53.8 NC_002794.1 + 21921 0.76 0.569499
Target:  5'- --gCGGAGACgACGgCGGCGGCGCGGc -3'
miRNA:   3'- gaaGUCUUUG-UGCgGCUGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 22281 0.75 0.650214
Target:  5'- --gCAGAGACACGCCGACGGacaaaaCGGa -3'
miRNA:   3'- gaaGUCUUUGUGCGGCUGCCgc----GUCc -5'
10796 5' -53.8 NC_002794.1 + 26088 0.66 0.984218
Target:  5'- ----cGggGCAgCGCCGACGGCcccggcgaucgccGUGGGc -3'
miRNA:   3'- gaaguCuuUGU-GCGGCUGCCG-------------CGUCC- -5'
10796 5' -53.8 NC_002794.1 + 32568 0.71 0.869153
Target:  5'- --gCGGAuaguCGCGCgCGGCGGUGcCGGGg -3'
miRNA:   3'- gaaGUCUuu--GUGCG-GCUGCCGC-GUCC- -5'
10796 5' -53.8 NC_002794.1 + 32935 0.68 0.93626
Target:  5'- ---gGGAAGCGC-UCGGCGGC-CAGGg -3'
miRNA:   3'- gaagUCUUUGUGcGGCUGCCGcGUCC- -5'
10796 5' -53.8 NC_002794.1 + 34706 0.7 0.882689
Target:  5'- --cCAGcAGGCcCGCCGGCgccacgaGGCGCGGGc -3'
miRNA:   3'- gaaGUC-UUUGuGCGGCUG-------CCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 34743 0.73 0.768136
Target:  5'- --gCAG-AGCGCG-CGACGGCGCGGu -3'
miRNA:   3'- gaaGUCuUUGUGCgGCUGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 36368 0.66 0.984397
Target:  5'- --cCGGguGCGCGCCcGCGGCGaagcGGu -3'
miRNA:   3'- gaaGUCuuUGUGCGGcUGCCGCgu--CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.