miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10796 5' -53.8 NC_002794.1 + 36569 0.66 0.978302
Target:  5'- --gCAGAcACGCGCCGcCGa-GCAGGc -3'
miRNA:   3'- gaaGUCUuUGUGCGGCuGCcgCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 36941 0.67 0.97336
Target:  5'- ---gAGAAAgucCGCGUCGcGCGGCgGCAGGc -3'
miRNA:   3'- gaagUCUUU---GUGCGGC-UGCCG-CGUCC- -5'
10796 5' -53.8 NC_002794.1 + 37735 0.69 0.917356
Target:  5'- --gCGGcgGCGcCGCCGGCGGCggcgcggcggcgccgGCGGGa -3'
miRNA:   3'- gaaGUCuuUGU-GCGGCUGCCG---------------CGUCC- -5'
10796 5' -53.8 NC_002794.1 + 38083 0.66 0.982336
Target:  5'- -cUCGGAcacggucAGCGCGaCCGGCGugaagaCGCGGGa -3'
miRNA:   3'- gaAGUCU-------UUGUGC-GGCUGCc-----GCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 40375 0.73 0.739656
Target:  5'- uCUUCAGAcgGGCAacgccaccacuCGCCGAuuCGGuCGCGGGg -3'
miRNA:   3'- -GAAGUCU--UUGU-----------GCGGCU--GCC-GCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 41975 0.67 0.964492
Target:  5'- -gUCGGcucCACGCCGAgGGU-CAGGg -3'
miRNA:   3'- gaAGUCuuuGUGCGGCUgCCGcGUCC- -5'
10796 5' -53.8 NC_002794.1 + 42061 0.68 0.940975
Target:  5'- --cCAGAugaugUugGCCGACuGGCcGCGGGa -3'
miRNA:   3'- gaaGUCUuu---GugCGGCUG-CCG-CGUCC- -5'
10796 5' -53.8 NC_002794.1 + 42644 0.67 0.960774
Target:  5'- --gCGGAGuCGCggccgaaGCCGACGGCGCcgccggcacGGGg -3'
miRNA:   3'- gaaGUCUUuGUG-------CGGCUGCCGCG---------UCC- -5'
10796 5' -53.8 NC_002794.1 + 48083 0.69 0.926133
Target:  5'- --gCGGGAGCAgcCGCCGcucgcCGGCGuCAGGc -3'
miRNA:   3'- gaaGUCUUUGU--GCGGCu----GCCGC-GUCC- -5'
10796 5' -53.8 NC_002794.1 + 49604 0.72 0.795551
Target:  5'- -aUCGGcGACggcggGCGCCGGCGGCGCc-- -3'
miRNA:   3'- gaAGUCuUUG-----UGCGGCUGCCGCGucc -5'
10796 5' -53.8 NC_002794.1 + 52679 0.69 0.931313
Target:  5'- ---gAGAGGgACGCCaggaaACGGCGCAGa -3'
miRNA:   3'- gaagUCUUUgUGCGGc----UGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 52743 0.66 0.98029
Target:  5'- --cCAGGAACcguucguaguaccGCGCCG-CGGCcCGGGc -3'
miRNA:   3'- gaaGUCUUUG-------------UGCGGCuGCCGcGUCC- -5'
10796 5' -53.8 NC_002794.1 + 53525 0.69 0.926133
Target:  5'- ---uGGAGAa--GCCGugGGCGCGGcGg -3'
miRNA:   3'- gaagUCUUUgugCGGCugCCGCGUC-C- -5'
10796 5' -53.8 NC_002794.1 + 54837 0.66 0.980502
Target:  5'- gUUCGGcgGCacccaACGCCcguaGGcCGGCGCGGGc -3'
miRNA:   3'- gAAGUCuuUG-----UGCGG----CU-GCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 55254 0.69 0.920718
Target:  5'- ---gAGGAGgACGCCGaagagccgggggGCGGCGguGGc -3'
miRNA:   3'- gaagUCUUUgUGCGGC------------UGCCGCguCC- -5'
10796 5' -53.8 NC_002794.1 + 55636 0.68 0.94971
Target:  5'- --cCAGcacGCGgGCCGGCaGGCGCAGc -3'
miRNA:   3'- gaaGUCuu-UGUgCGGCUG-CCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 55708 0.66 0.975924
Target:  5'- gCUggaAGAAGuCGCGCgUGACGGCGUuguGGu -3'
miRNA:   3'- -GAag-UCUUU-GUGCG-GCUGCCGCGu--CC- -5'
10796 5' -53.8 NC_002794.1 + 55819 0.68 0.93626
Target:  5'- --gCGGgcGCGCGCUGAUGGCGaAGa -3'
miRNA:   3'- gaaGUCuuUGUGCGGCUGCCGCgUCc -5'
10796 5' -53.8 NC_002794.1 + 57102 0.66 0.975676
Target:  5'- -gUCAaGAACACgGCCGACGccauggaGCGCGGc -3'
miRNA:   3'- gaAGUcUUUGUG-CGGCUGC-------CGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 57928 0.71 0.869153
Target:  5'- --gCAGAAGCucgacuuCGCCGACGcgcuGCGCAGc -3'
miRNA:   3'- gaaGUCUUUGu------GCGGCUGC----CGCGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.