miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10796 5' -53.8 NC_002794.1 + 192950 0.68 0.94971
Target:  5'- gCUgcgCAGA--CAgGCCGACGagccGUGCAGGa -3'
miRNA:   3'- -GAa--GUCUuuGUgCGGCUGC----CGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 192236 0.75 0.640094
Target:  5'- -aUCGGcgcuGCcguCGCCGACGGCGCGGu -3'
miRNA:   3'- gaAGUCuu--UGu--GCGGCUGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 191862 0.68 0.945457
Target:  5'- -gUCGuGAA--AgGCCGGCGGCGgAGGg -3'
miRNA:   3'- gaAGU-CUUugUgCGGCUGCCGCgUCC- -5'
10796 5' -53.8 NC_002794.1 + 190985 0.68 0.945457
Target:  5'- --gCAGGcAGCGCGgCGACGGCGUc-- -3'
miRNA:   3'- gaaGUCU-UUGUGCgGCUGCCGCGucc -5'
10796 5' -53.8 NC_002794.1 + 190352 0.67 0.97336
Target:  5'- -gUCAGGucguCG-GCCGcGCGGCGCAGcGg -3'
miRNA:   3'- gaAGUCUuu--GUgCGGC-UGCCGCGUC-C- -5'
10796 5' -53.8 NC_002794.1 + 189456 0.67 0.961123
Target:  5'- -gUCGGccagcACGCGCCGAaaGGCcGCGGGc -3'
miRNA:   3'- gaAGUCuu---UGUGCGGCUg-CCG-CGUCC- -5'
10796 5' -53.8 NC_002794.1 + 188927 0.73 0.739656
Target:  5'- gCUUCAGcGGACAgGCCcgcuguccgGGCGuGCGCAGGu -3'
miRNA:   3'- -GAAGUC-UUUGUgCGG---------CUGC-CGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 187826 0.66 0.980502
Target:  5'- ----cGGAGCGCGCuCGGCucGGCGCgccgAGGg -3'
miRNA:   3'- gaaguCUUUGUGCG-GCUG--CCGCG----UCC- -5'
10796 5' -53.8 NC_002794.1 + 187566 0.69 0.931313
Target:  5'- -gUCGGGcccguACcCGCCGuCGGCGCGGc -3'
miRNA:   3'- gaAGUCUu----UGuGCGGCuGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 187473 0.66 0.984218
Target:  5'- -cUCGGc-GCGCGCCGggccgaggacgagGCcGCGCAGGc -3'
miRNA:   3'- gaAGUCuuUGUGCGGC-------------UGcCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 186832 0.71 0.846264
Target:  5'- --aCGGGAAgGCGcCCGACaGcGCGCGGGc -3'
miRNA:   3'- gaaGUCUUUgUGC-GGCUG-C-CGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 185779 0.72 0.786545
Target:  5'- ----cGucACACGUCGGcCGGCGCGGGg -3'
miRNA:   3'- gaaguCuuUGUGCGGCU-GCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 185740 0.67 0.970604
Target:  5'- --aCAGAcACACacacgcguccaGCCGcCGGCGCGGc -3'
miRNA:   3'- gaaGUCUuUGUG-----------CGGCuGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 184639 0.74 0.690472
Target:  5'- -aUCGGcguCGCGUCGGCGGCGUAGc -3'
miRNA:   3'- gaAGUCuuuGUGCGGCUGCCGCGUCc -5'
10796 5' -53.8 NC_002794.1 + 184556 0.72 0.804411
Target:  5'- uCUUCGGAcgccucACGCGCCGccGCGGCgGCGGcGg -3'
miRNA:   3'- -GAAGUCUu-----UGUGCGGC--UGCCG-CGUC-C- -5'
10796 5' -53.8 NC_002794.1 + 184488 0.71 0.869153
Target:  5'- --gCGGGGccccGgACGCCcgGGCGGCGCGGGc -3'
miRNA:   3'- gaaGUCUU----UgUGCGG--CUGCCGCGUCC- -5'
10796 5' -53.8 NC_002794.1 + 183182 0.77 0.527029
Target:  5'- -gUCGGGGACcgagacgcgccgccACGCCGGCGGCGCGu- -3'
miRNA:   3'- gaAGUCUUUG--------------UGCGGCUGCCGCGUcc -5'
10796 5' -53.8 NC_002794.1 + 181812 0.67 0.961123
Target:  5'- --cCAGAAccGCACGUCGggguucGCGGC-CAGGu -3'
miRNA:   3'- gaaGUCUU--UGUGCGGC------UGCCGcGUCC- -5'
10796 5' -53.8 NC_002794.1 + 180724 0.73 0.739656
Target:  5'- gUUCAGAGACGCGCgGACGaCGCc-- -3'
miRNA:   3'- gAAGUCUUUGUGCGgCUGCcGCGucc -5'
10796 5' -53.8 NC_002794.1 + 180300 0.68 0.953736
Target:  5'- ----cGcAACACGCCGGcCGGCGCGa- -3'
miRNA:   3'- gaaguCuUUGUGCGGCU-GCCGCGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.