miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10797 3' -57.3 NC_002794.1 + 30983 0.66 0.900089
Target:  5'- cUCCCCGgcGAcggcGGGGUcuuCGCCG-GACGu -3'
miRNA:   3'- -AGGGGCuuCU----UCUCG---GCGGCuCUGUu -5'
10797 3' -57.3 NC_002794.1 + 145985 0.66 0.900089
Target:  5'- gCCCaGAgcgcccAGAAcGGCCGCCGGGGCc- -3'
miRNA:   3'- aGGGgCU------UCUUcUCGGCGGCUCUGuu -5'
10797 3' -57.3 NC_002794.1 + 1335 0.66 0.899459
Target:  5'- cUCCCCGGGuccGAAGAGaCGCCugaacggGGGGCGu -3'
miRNA:   3'- -AGGGGCUU---CUUCUCgGCGG-------CUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 117649 0.66 0.893683
Target:  5'- gCCCCGGAcGAAGAGCgccaCGCgCGGcGGCGc -3'
miRNA:   3'- aGGGGCUU-CUUCUCG----GCG-GCU-CUGUu -5'
10797 3' -57.3 NC_002794.1 + 105892 0.66 0.893683
Target:  5'- --gUgGGAGAGGAGUCGCCGcGGCGg -3'
miRNA:   3'- aggGgCUUCUUCUCGGCGGCuCUGUu -5'
10797 3' -57.3 NC_002794.1 + 127110 0.66 0.893683
Target:  5'- cUCgCCGAuGAAcagcucGAGCCGCUgaugGAGACGAa -3'
miRNA:   3'- -AGgGGCUuCUU------CUCGGCGG----CUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 124516 0.66 0.893683
Target:  5'- gCCgCGAGacaAGGAGCCGCCGAcgcuGGCGc -3'
miRNA:   3'- aGGgGCUUc--UUCUCGGCGGCU----CUGUu -5'
10797 3' -57.3 NC_002794.1 + 141422 0.66 0.873151
Target:  5'- aCCUCGggGGcggcGGGGgCGCCGGGGg-- -3'
miRNA:   3'- aGGGGCuuCU----UCUCgGCGGCUCUguu -5'
10797 3' -57.3 NC_002794.1 + 71051 0.66 0.872433
Target:  5'- gUCCCCc-GGAAGccgccgccgcagcAGCCGCCGgguccAGACGAa -3'
miRNA:   3'- -AGGGGcuUCUUC-------------UCGGCGGC-----UCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 34313 0.67 0.865883
Target:  5'- cUCCUCGAcccGGGAG-GCCGuCCGcaAGGCGAc -3'
miRNA:   3'- -AGGGGCU---UCUUCuCGGC-GGC--UCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 181437 0.67 0.865883
Target:  5'- gCCgUCGgcGAGGGGCCGCCcGGAgGAc -3'
miRNA:   3'- aGG-GGCuuCUUCUCGGCGGcUCUgUU- -5'
10797 3' -57.3 NC_002794.1 + 86169 0.67 0.865883
Target:  5'- -gCCCGAccGGAugccccGGGCCgaGCCGGGACGGa -3'
miRNA:   3'- agGGGCU--UCUu-----CUCGG--CGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 86529 0.67 0.865883
Target:  5'- -gCCCGAccGGAugccccGGGCCgaGCCGGGACGGa -3'
miRNA:   3'- agGGGCU--UCUu-----CUCGG--CGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 86361 0.67 0.865883
Target:  5'- -gCCCGAccGGAugccccGGGCCgaGCCGGGACGGa -3'
miRNA:   3'- agGGGCU--UCUu-----CUCGG--CGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 118945 0.67 0.858413
Target:  5'- -gCCCGGggugcaGGAAGAGCCG-CGuGACGGu -3'
miRNA:   3'- agGGGCU------UCUUCUCGGCgGCuCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 145789 0.67 0.856895
Target:  5'- gUCCCCGGccggcucGGAcGAcgacgccGCCGCCGGcGGCGAg -3'
miRNA:   3'- -AGGGGCU-------UCUuCU-------CGGCGGCU-CUGUU- -5'
10797 3' -57.3 NC_002794.1 + 147150 0.67 0.850744
Target:  5'- gCCCCGggGccgcGAGGGCCaGCUG-GACc- -3'
miRNA:   3'- aGGGGCuuC----UUCUCGG-CGGCuCUGuu -5'
10797 3' -57.3 NC_002794.1 + 84761 0.67 0.842884
Target:  5'- gCCgCGA--GAGGGCCGuCCGAGGCc- -3'
miRNA:   3'- aGGgGCUucUUCUCGGC-GGCUCUGuu -5'
10797 3' -57.3 NC_002794.1 + 61348 0.67 0.834839
Target:  5'- cUCCCCGAcguccagcucGAcGAGCCGCUGcucGACGAg -3'
miRNA:   3'- -AGGGGCUu---------CUuCUCGGCGGCu--CUGUU- -5'
10797 3' -57.3 NC_002794.1 + 10037 0.67 0.826616
Target:  5'- gCCaCCGAcagccagaugAGAGGAGCCaCCGAGAg-- -3'
miRNA:   3'- aGG-GGCU----------UCUUCUCGGcGGCUCUguu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.