Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10797 | 3' | -57.3 | NC_002794.1 | + | 30983 | 0.66 | 0.900089 |
Target: 5'- cUCCCCGgcGAcggcGGGGUcuuCGCCG-GACGu -3' miRNA: 3'- -AGGGGCuuCU----UCUCG---GCGGCuCUGUu -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 71051 | 0.66 | 0.872433 |
Target: 5'- gUCCCCc-GGAAGccgccgccgcagcAGCCGCCGgguccAGACGAa -3' miRNA: 3'- -AGGGGcuUCUUC-------------UCGGCGGC-----UCUGUU- -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 141422 | 0.66 | 0.873151 |
Target: 5'- aCCUCGggGGcggcGGGGgCGCCGGGGg-- -3' miRNA: 3'- aGGGGCuuCU----UCUCgGCGGCUCUguu -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 117649 | 0.66 | 0.893683 |
Target: 5'- gCCCCGGAcGAAGAGCgccaCGCgCGGcGGCGc -3' miRNA: 3'- aGGGGCUU-CUUCUCG----GCG-GCU-CUGUu -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 105892 | 0.66 | 0.893683 |
Target: 5'- --gUgGGAGAGGAGUCGCCGcGGCGg -3' miRNA: 3'- aggGgCUUCUUCUCGGCGGCuCUGUu -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 127110 | 0.66 | 0.893683 |
Target: 5'- cUCgCCGAuGAAcagcucGAGCCGCUgaugGAGACGAa -3' miRNA: 3'- -AGgGGCUuCUU------CUCGGCGG----CUCUGUU- -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 124516 | 0.66 | 0.893683 |
Target: 5'- gCCgCGAGacaAGGAGCCGCCGAcgcuGGCGc -3' miRNA: 3'- aGGgGCUUc--UUCUCGGCGGCU----CUGUu -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 1335 | 0.66 | 0.899459 |
Target: 5'- cUCCCCGGGuccGAAGAGaCGCCugaacggGGGGCGu -3' miRNA: 3'- -AGGGGCUU---CUUCUCgGCGG-------CUCUGUu -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 145985 | 0.66 | 0.900089 |
Target: 5'- gCCCaGAgcgcccAGAAcGGCCGCCGGGGCc- -3' miRNA: 3'- aGGGgCU------UCUUcUCGGCGGCUCUGuu -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 61348 | 0.67 | 0.834839 |
Target: 5'- cUCCCCGAcguccagcucGAcGAGCCGCUGcucGACGAg -3' miRNA: 3'- -AGGGGCUu---------CUuCUCGGCGGCu--CUGUU- -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 147150 | 0.67 | 0.850744 |
Target: 5'- gCCCCGggGccgcGAGGGCCaGCUG-GACc- -3' miRNA: 3'- aGGGGCuuC----UUCUCGG-CGGCuCUGuu -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 84761 | 0.67 | 0.842884 |
Target: 5'- gCCgCGA--GAGGGCCGuCCGAGGCc- -3' miRNA: 3'- aGGgGCUucUUCUCGGC-GGCUCUGuu -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 145789 | 0.67 | 0.856895 |
Target: 5'- gUCCCCGGccggcucGGAcGAcgacgccGCCGCCGGcGGCGAg -3' miRNA: 3'- -AGGGGCU-------UCUuCU-------CGGCGGCU-CUGUU- -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 34313 | 0.67 | 0.865883 |
Target: 5'- cUCCUCGAcccGGGAG-GCCGuCCGcaAGGCGAc -3' miRNA: 3'- -AGGGGCU---UCUUCuCGGC-GGC--UCUGUU- -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 181437 | 0.67 | 0.865883 |
Target: 5'- gCCgUCGgcGAGGGGCCGCCcGGAgGAc -3' miRNA: 3'- aGG-GGCuuCUUCUCGGCGGcUCUgUU- -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 118945 | 0.67 | 0.858413 |
Target: 5'- -gCCCGGggugcaGGAAGAGCCG-CGuGACGGu -3' miRNA: 3'- agGGGCU------UCUUCUCGGCgGCuCUGUU- -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 86169 | 0.67 | 0.865883 |
Target: 5'- -gCCCGAccGGAugccccGGGCCgaGCCGGGACGGa -3' miRNA: 3'- agGGGCU--UCUu-----CUCGG--CGGCUCUGUU- -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 86529 | 0.67 | 0.865883 |
Target: 5'- -gCCCGAccGGAugccccGGGCCgaGCCGGGACGGa -3' miRNA: 3'- agGGGCU--UCUu-----CUCGG--CGGCUCUGUU- -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 86361 | 0.67 | 0.865883 |
Target: 5'- -gCCCGAccGGAugccccGGGCCgaGCCGGGACGGa -3' miRNA: 3'- agGGGCU--UCUu-----CUCGG--CGGCUCUGUU- -5' |
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10797 | 3' | -57.3 | NC_002794.1 | + | 10037 | 0.67 | 0.826616 |
Target: 5'- gCCaCCGAcagccagaugAGAGGAGCCaCCGAGAg-- -3' miRNA: 3'- aGG-GGCU----------UCUUCUCGGcGGCUCUguu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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