miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10797 3' -57.3 NC_002794.1 + 76372 1.06 0.004144
Target:  5'- gUCCCCGAAGAAGAGCCGCCGAGACAAc -3'
miRNA:   3'- -AGGGGCUUCUUCUCGGCGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 68744 0.79 0.256302
Target:  5'- aCCCCGGAGGccgacugagccGGGCCGCCGGGGCGc -3'
miRNA:   3'- aGGGGCUUCUu----------CUCGGCGGCUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 133989 0.75 0.408992
Target:  5'- cCCUCGAAGAGGucGGUCGCCGGGuGCGAg -3'
miRNA:   3'- aGGGGCUUCUUC--UCGGCGGCUC-UGUU- -5'
10797 3' -57.3 NC_002794.1 + 23681 0.74 0.471075
Target:  5'- gUCCCCGAAcacGcGCCGCCGAGGCc- -3'
miRNA:   3'- -AGGGGCUUcuuCuCGGCGGCUCUGuu -5'
10797 3' -57.3 NC_002794.1 + 10955 0.73 0.489681
Target:  5'- -aCCCG--GAGGGGCCgGCCGAGACGu -3'
miRNA:   3'- agGGGCuuCUUCUCGG-CGGCUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 8038 0.73 0.489681
Target:  5'- gUCCCGAGGAAGAcGCCGCaccgucuuggCGGGGCGc -3'
miRNA:   3'- aGGGGCUUCUUCU-CGGCG----------GCUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 82556 0.73 0.524965
Target:  5'- cUCCCgccggcccagccggCGAGGccGAcGCCGCCGAGACGGa -3'
miRNA:   3'- -AGGG--------------GCUUCuuCU-CGGCGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 53172 0.72 0.547378
Target:  5'- cUCCCCGAAGcucggcAGGGCCcaGCCGAGcCAc -3'
miRNA:   3'- -AGGGGCUUCu-----UCUCGG--CGGCUCuGUu -5'
10797 3' -57.3 NC_002794.1 + 110288 0.72 0.557219
Target:  5'- gUCCUCGGGcccGAGAGCCGCgGGGACu- -3'
miRNA:   3'- -AGGGGCUUc--UUCUCGGCGgCUCUGuu -5'
10797 3' -57.3 NC_002794.1 + 49777 0.72 0.567109
Target:  5'- cUCCCCGGAGGcgguuGGGCacgaGCCGAGcCAGg -3'
miRNA:   3'- -AGGGGCUUCUu----CUCGg---CGGCUCuGUU- -5'
10797 3' -57.3 NC_002794.1 + 107157 0.72 0.577044
Target:  5'- cCCCCGgcGAGG-GCCGCCGcuACGc -3'
miRNA:   3'- aGGGGCuuCUUCuCGGCGGCucUGUu -5'
10797 3' -57.3 NC_002794.1 + 102639 0.72 0.584021
Target:  5'- aUCCgCCGGcuggcggcgcgcucGGAGGAGCUGCCGAG-CGu -3'
miRNA:   3'- -AGG-GGCU--------------UCUUCUCGGCGGCUCuGUu -5'
10797 3' -57.3 NC_002794.1 + 182021 0.71 0.627156
Target:  5'- aCCCCGgcGuccGGGCCGCCGGcGACc- -3'
miRNA:   3'- aGGGGCuuCuu-CUCGGCGGCU-CUGuu -5'
10797 3' -57.3 NC_002794.1 + 3150 0.71 0.636212
Target:  5'- aCCCCGGugacucaAGguGAcucGCCGCUGAGACAGc -3'
miRNA:   3'- aGGGGCU-------UCuuCU---CGGCGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 133661 0.71 0.637218
Target:  5'- -aCCCGAGGGAGGGUCGCgGGguuuuGACAu -3'
miRNA:   3'- agGGGCUUCUUCUCGGCGgCU-----CUGUu -5'
10797 3' -57.3 NC_002794.1 + 150022 0.7 0.667349
Target:  5'- gCUCCG-AGAcccGGCCGCCGAGugGAg -3'
miRNA:   3'- aGGGGCuUCUuc-UCGGCGGCUCugUU- -5'
10797 3' -57.3 NC_002794.1 + 160191 0.7 0.697232
Target:  5'- cCCCCGAAGGAGcacaagcGCCaaaCCGGGACGc -3'
miRNA:   3'- aGGGGCUUCUUCu------CGGc--GGCUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 55352 0.7 0.707099
Target:  5'- -gCCCGAGGcGGccgaGGCgGCCGAGGCGg -3'
miRNA:   3'- agGGGCUUCuUC----UCGgCGGCUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 14759 0.69 0.716904
Target:  5'- -gCCCGAAGccgucGAG-GCCGCUGAGGCc- -3'
miRNA:   3'- agGGGCUUC-----UUCuCGGCGGCUCUGuu -5'
10797 3' -57.3 NC_002794.1 + 101200 0.69 0.726639
Target:  5'- cUCCUgGAGGAGGcGGCCGCCc-GGCAGa -3'
miRNA:   3'- -AGGGgCUUCUUC-UCGGCGGcuCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.