miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10797 3' -57.3 NC_002794.1 + 10037 0.67 0.826616
Target:  5'- gCCaCCGAcagccagaugAGAGGAGCCaCCGAGAg-- -3'
miRNA:   3'- aGG-GGCU----------UCUUCUCGGcGGCUCUguu -5'
10797 3' -57.3 NC_002794.1 + 185271 0.68 0.818222
Target:  5'- gCCgCCGGccGAGuGGGCCGCCG-GACAGg -3'
miRNA:   3'- aGG-GGCUu-CUU-CUCGGCGGCuCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 125298 0.68 0.818222
Target:  5'- cUUCCUGAcGGAAGAGCCguucgcccgcGCCGAGcCGGa -3'
miRNA:   3'- -AGGGGCU-UCUUCUCGG----------CGGCUCuGUU- -5'
10797 3' -57.3 NC_002794.1 + 97407 0.68 0.818222
Target:  5'- aUCCCgGAGGAguaucAGAGCgGCaacaCGAGGCGc -3'
miRNA:   3'- -AGGGgCUUCU-----UCUCGgCG----GCUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 88733 0.68 0.818222
Target:  5'- aCCUCGGAuGAccucGGGGUCGCCGAGGa-- -3'
miRNA:   3'- aGGGGCUU-CU----UCUCGGCGGCUCUguu -5'
10797 3' -57.3 NC_002794.1 + 4152 0.68 0.818222
Target:  5'- cCCCCGGacgacgaggguAGggGucgucgcggugGGUCGUCGAGGCAAg -3'
miRNA:   3'- aGGGGCU-----------UCuuC-----------UCGGCGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 137578 0.68 0.818222
Target:  5'- gCCgCCGggGccggagugcgGGGAGCCGCCGccGGCGGu -3'
miRNA:   3'- aGG-GGCuuC----------UUCUCGGCGGCu-CUGUU- -5'
10797 3' -57.3 NC_002794.1 + 93857 0.68 0.809664
Target:  5'- gCCgCGgcGgcGAGCCGCCcGAGuACGAg -3'
miRNA:   3'- aGGgGCuuCuuCUCGGCGG-CUC-UGUU- -5'
10797 3' -57.3 NC_002794.1 + 153789 0.68 0.800951
Target:  5'- uUCCCCGAuccggaugaGGAcgAGAGCCGgCCcGGACc- -3'
miRNA:   3'- -AGGGGCU---------UCU--UCUCGGC-GGcUCUGuu -5'
10797 3' -57.3 NC_002794.1 + 136930 0.68 0.800951
Target:  5'- gCCCCG-AGuuGAcGgCGCCGAGAUAGu -3'
miRNA:   3'- aGGGGCuUCuuCU-CgGCGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 183548 0.68 0.79209
Target:  5'- -gCCCGggGAcacugcgcgccGAGCCGCCGAcACGGg -3'
miRNA:   3'- agGGGCuuCUu----------CUCGGCGGCUcUGUU- -5'
10797 3' -57.3 NC_002794.1 + 60300 0.68 0.773959
Target:  5'- gCCUCGcAGAAGGGCuCGCUG-GGCGAc -3'
miRNA:   3'- aGGGGCuUCUUCUCG-GCGGCuCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 148130 0.69 0.764705
Target:  5'- -gUCgGgcGcGGGGCCGCCGGGGCGAg -3'
miRNA:   3'- agGGgCuuCuUCUCGGCGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 113918 0.69 0.736296
Target:  5'- gCCUCcAGGucG-GCCGCCGAGGCGAc -3'
miRNA:   3'- aGGGGcUUCuuCuCGGCGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 145922 0.69 0.736296
Target:  5'- gCgCCGAgcGGAGGGGCCGgCGAGAg-- -3'
miRNA:   3'- aGgGGCU--UCUUCUCGGCgGCUCUguu -5'
10797 3' -57.3 NC_002794.1 + 61541 0.69 0.726639
Target:  5'- gCCgCGAAGAcGAcGCCGCCGcGGCGg -3'
miRNA:   3'- aGGgGCUUCUuCU-CGGCGGCuCUGUu -5'
10797 3' -57.3 NC_002794.1 + 101200 0.69 0.726639
Target:  5'- cUCCUgGAGGAGGcGGCCGCCc-GGCAGa -3'
miRNA:   3'- -AGGGgCUUCUUC-UCGGCGGcuCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 14759 0.69 0.716904
Target:  5'- -gCCCGAAGccgucGAG-GCCGCUGAGGCc- -3'
miRNA:   3'- agGGGCUUC-----UUCuCGGCGGCUCUGuu -5'
10797 3' -57.3 NC_002794.1 + 55352 0.7 0.707099
Target:  5'- -gCCCGAGGcGGccgaGGCgGCCGAGGCGg -3'
miRNA:   3'- agGGGCUUCuUC----UCGgCGGCUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 160191 0.7 0.697232
Target:  5'- cCCCCGAAGGAGcacaagcGCCaaaCCGGGACGc -3'
miRNA:   3'- aGGGGCUUCUUCu------CGGc--GGCUCUGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.