miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10797 3' -57.3 NC_002794.1 + 1335 0.66 0.899459
Target:  5'- cUCCCCGGGuccGAAGAGaCGCCugaacggGGGGCGu -3'
miRNA:   3'- -AGGGGCUU---CUUCUCgGCGG-------CUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 3150 0.71 0.636212
Target:  5'- aCCCCGGugacucaAGguGAcucGCCGCUGAGACAGc -3'
miRNA:   3'- aGGGGCU-------UCuuCU---CGGCGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 4152 0.68 0.818222
Target:  5'- cCCCCGGacgacgaggguAGggGucgucgcggugGGUCGUCGAGGCAAg -3'
miRNA:   3'- aGGGGCU-----------UCuuC-----------UCGGCGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 8038 0.73 0.489681
Target:  5'- gUCCCGAGGAAGAcGCCGCaccgucuuggCGGGGCGc -3'
miRNA:   3'- aGGGGCUUCUUCU-CGGCG----------GCUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 10037 0.67 0.826616
Target:  5'- gCCaCCGAcagccagaugAGAGGAGCCaCCGAGAg-- -3'
miRNA:   3'- aGG-GGCU----------UCUUCUCGGcGGCUCUguu -5'
10797 3' -57.3 NC_002794.1 + 10955 0.73 0.489681
Target:  5'- -aCCCG--GAGGGGCCgGCCGAGACGu -3'
miRNA:   3'- agGGGCuuCUUCUCGG-CGGCUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 14759 0.69 0.716904
Target:  5'- -gCCCGAAGccgucGAG-GCCGCUGAGGCc- -3'
miRNA:   3'- agGGGCUUC-----UUCuCGGCGGCUCUGuu -5'
10797 3' -57.3 NC_002794.1 + 23681 0.74 0.471075
Target:  5'- gUCCCCGAAcacGcGCCGCCGAGGCc- -3'
miRNA:   3'- -AGGGGCUUcuuCuCGGCGGCUCUGuu -5'
10797 3' -57.3 NC_002794.1 + 30983 0.66 0.900089
Target:  5'- cUCCCCGgcGAcggcGGGGUcuuCGCCG-GACGu -3'
miRNA:   3'- -AGGGGCuuCU----UCUCG---GCGGCuCUGUu -5'
10797 3' -57.3 NC_002794.1 + 34313 0.67 0.865883
Target:  5'- cUCCUCGAcccGGGAG-GCCGuCCGcaAGGCGAc -3'
miRNA:   3'- -AGGGGCU---UCUUCuCGGC-GGC--UCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 49777 0.72 0.567109
Target:  5'- cUCCCCGGAGGcgguuGGGCacgaGCCGAGcCAGg -3'
miRNA:   3'- -AGGGGCUUCUu----CUCGg---CGGCUCuGUU- -5'
10797 3' -57.3 NC_002794.1 + 53172 0.72 0.547378
Target:  5'- cUCCCCGAAGcucggcAGGGCCcaGCCGAGcCAc -3'
miRNA:   3'- -AGGGGCUUCu-----UCUCGG--CGGCUCuGUu -5'
10797 3' -57.3 NC_002794.1 + 55352 0.7 0.707099
Target:  5'- -gCCCGAGGcGGccgaGGCgGCCGAGGCGg -3'
miRNA:   3'- agGGGCUUCuUC----UCGgCGGCUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 60300 0.68 0.773959
Target:  5'- gCCUCGcAGAAGGGCuCGCUG-GGCGAc -3'
miRNA:   3'- aGGGGCuUCUUCUCG-GCGGCuCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 61348 0.67 0.834839
Target:  5'- cUCCCCGAcguccagcucGAcGAGCCGCUGcucGACGAg -3'
miRNA:   3'- -AGGGGCUu---------CUuCUCGGCGGCu--CUGUU- -5'
10797 3' -57.3 NC_002794.1 + 61541 0.69 0.726639
Target:  5'- gCCgCGAAGAcGAcGCCGCCGcGGCGg -3'
miRNA:   3'- aGGgGCUUCUuCU-CGGCGGCuCUGUu -5'
10797 3' -57.3 NC_002794.1 + 68744 0.79 0.256302
Target:  5'- aCCCCGGAGGccgacugagccGGGCCGCCGGGGCGc -3'
miRNA:   3'- aGGGGCUUCUu----------CUCGGCGGCUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 71051 0.66 0.872433
Target:  5'- gUCCCCc-GGAAGccgccgccgcagcAGCCGCCGgguccAGACGAa -3'
miRNA:   3'- -AGGGGcuUCUUC-------------UCGGCGGC-----UCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 76372 1.06 0.004144
Target:  5'- gUCCCCGAAGAAGAGCCGCCGAGACAAc -3'
miRNA:   3'- -AGGGGCUUCUUCUCGGCGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 82556 0.73 0.524965
Target:  5'- cUCCCgccggcccagccggCGAGGccGAcGCCGCCGAGACGGa -3'
miRNA:   3'- -AGGG--------------GCUUCuuCU-CGGCGGCUCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.