miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10797 3' -57.3 NC_002794.1 + 84761 0.67 0.842884
Target:  5'- gCCgCGA--GAGGGCCGuCCGAGGCc- -3'
miRNA:   3'- aGGgGCUucUUCUCGGC-GGCUCUGuu -5'
10797 3' -57.3 NC_002794.1 + 86169 0.67 0.865883
Target:  5'- -gCCCGAccGGAugccccGGGCCgaGCCGGGACGGa -3'
miRNA:   3'- agGGGCU--UCUu-----CUCGG--CGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 86361 0.67 0.865883
Target:  5'- -gCCCGAccGGAugccccGGGCCgaGCCGGGACGGa -3'
miRNA:   3'- agGGGCU--UCUu-----CUCGG--CGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 86529 0.67 0.865883
Target:  5'- -gCCCGAccGGAugccccGGGCCgaGCCGGGACGGa -3'
miRNA:   3'- agGGGCU--UCUu-----CUCGG--CGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 86891 0.67 0.826616
Target:  5'- -gCCCGAucccGGcGGGGCCGCCGAcccgguGACGc -3'
miRNA:   3'- agGGGCU----UCuUCUCGGCGGCU------CUGUu -5'
10797 3' -57.3 NC_002794.1 + 88733 0.68 0.818222
Target:  5'- aCCUCGGAuGAccucGGGGUCGCCGAGGa-- -3'
miRNA:   3'- aGGGGCUU-CU----UCUCGGCGGCUCUguu -5'
10797 3' -57.3 NC_002794.1 + 93857 0.68 0.809664
Target:  5'- gCCgCGgcGgcGAGCCGCCcGAGuACGAg -3'
miRNA:   3'- aGGgGCuuCuuCUCGGCGG-CUC-UGUU- -5'
10797 3' -57.3 NC_002794.1 + 97407 0.68 0.818222
Target:  5'- aUCCCgGAGGAguaucAGAGCgGCaacaCGAGGCGc -3'
miRNA:   3'- -AGGGgCUUCU-----UCUCGgCG----GCUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 101200 0.69 0.726639
Target:  5'- cUCCUgGAGGAGGcGGCCGCCc-GGCAGa -3'
miRNA:   3'- -AGGGgCUUCUUC-UCGGCGGcuCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 102639 0.72 0.584021
Target:  5'- aUCCgCCGGcuggcggcgcgcucGGAGGAGCUGCCGAG-CGu -3'
miRNA:   3'- -AGG-GGCU--------------UCUUCUCGGCGGCUCuGUu -5'
10797 3' -57.3 NC_002794.1 + 105892 0.66 0.893683
Target:  5'- --gUgGGAGAGGAGUCGCCGcGGCGg -3'
miRNA:   3'- aggGgCUUCUUCUCGGCGGCuCUGUu -5'
10797 3' -57.3 NC_002794.1 + 107157 0.72 0.577044
Target:  5'- cCCCCGgcGAGG-GCCGCCGcuACGc -3'
miRNA:   3'- aGGGGCuuCUUCuCGGCGGCucUGUu -5'
10797 3' -57.3 NC_002794.1 + 110288 0.72 0.557219
Target:  5'- gUCCUCGGGcccGAGAGCCGCgGGGACu- -3'
miRNA:   3'- -AGGGGCUUc--UUCUCGGCGgCUCUGuu -5'
10797 3' -57.3 NC_002794.1 + 113918 0.69 0.736296
Target:  5'- gCCUCcAGGucG-GCCGCCGAGGCGAc -3'
miRNA:   3'- aGGGGcUUCuuCuCGGCGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 117649 0.66 0.893683
Target:  5'- gCCCCGGAcGAAGAGCgccaCGCgCGGcGGCGc -3'
miRNA:   3'- aGGGGCUU-CUUCUCG----GCG-GCU-CUGUu -5'
10797 3' -57.3 NC_002794.1 + 118945 0.67 0.858413
Target:  5'- -gCCCGGggugcaGGAAGAGCCG-CGuGACGGu -3'
miRNA:   3'- agGGGCU------UCUUCUCGGCgGCuCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 124516 0.66 0.893683
Target:  5'- gCCgCGAGacaAGGAGCCGCCGAcgcuGGCGc -3'
miRNA:   3'- aGGgGCUUc--UUCUCGGCGGCU----CUGUu -5'
10797 3' -57.3 NC_002794.1 + 125298 0.68 0.818222
Target:  5'- cUUCCUGAcGGAAGAGCCguucgcccgcGCCGAGcCGGa -3'
miRNA:   3'- -AGGGGCU-UCUUCUCGG----------CGGCUCuGUU- -5'
10797 3' -57.3 NC_002794.1 + 127110 0.66 0.893683
Target:  5'- cUCgCCGAuGAAcagcucGAGCCGCUgaugGAGACGAa -3'
miRNA:   3'- -AGgGGCUuCUU------CUCGGCGG----CUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 133661 0.71 0.637218
Target:  5'- -aCCCGAGGGAGGGUCGCgGGguuuuGACAu -3'
miRNA:   3'- agGGGCUUCUUCUCGGCGgCU-----CUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.