miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10797 3' -57.3 NC_002794.1 + 185271 0.68 0.818222
Target:  5'- gCCgCCGGccGAGuGGGCCGCCG-GACAGg -3'
miRNA:   3'- aGG-GGCUu-CUU-CUCGGCGGCuCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 183548 0.68 0.79209
Target:  5'- -gCCCGggGAcacugcgcgccGAGCCGCCGAcACGGg -3'
miRNA:   3'- agGGGCuuCUu----------CUCGGCGGCUcUGUU- -5'
10797 3' -57.3 NC_002794.1 + 182021 0.71 0.627156
Target:  5'- aCCCCGgcGuccGGGCCGCCGGcGACc- -3'
miRNA:   3'- aGGGGCuuCuu-CUCGGCGGCU-CUGuu -5'
10797 3' -57.3 NC_002794.1 + 181437 0.67 0.865883
Target:  5'- gCCgUCGgcGAGGGGCCGCCcGGAgGAc -3'
miRNA:   3'- aGG-GGCuuCUUCUCGGCGGcUCUgUU- -5'
10797 3' -57.3 NC_002794.1 + 160191 0.7 0.697232
Target:  5'- cCCCCGAAGGAGcacaagcGCCaaaCCGGGACGc -3'
miRNA:   3'- aGGGGCUUCUUCu------CGGc--GGCUCUGUu -5'
10797 3' -57.3 NC_002794.1 + 153789 0.68 0.800951
Target:  5'- uUCCCCGAuccggaugaGGAcgAGAGCCGgCCcGGACc- -3'
miRNA:   3'- -AGGGGCU---------UCU--UCUCGGC-GGcUCUGuu -5'
10797 3' -57.3 NC_002794.1 + 150022 0.7 0.667349
Target:  5'- gCUCCG-AGAcccGGCCGCCGAGugGAg -3'
miRNA:   3'- aGGGGCuUCUuc-UCGGCGGCUCugUU- -5'
10797 3' -57.3 NC_002794.1 + 148130 0.69 0.764705
Target:  5'- -gUCgGgcGcGGGGCCGCCGGGGCGAg -3'
miRNA:   3'- agGGgCuuCuUCUCGGCGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 147150 0.67 0.850744
Target:  5'- gCCCCGggGccgcGAGGGCCaGCUG-GACc- -3'
miRNA:   3'- aGGGGCuuC----UUCUCGG-CGGCuCUGuu -5'
10797 3' -57.3 NC_002794.1 + 145985 0.66 0.900089
Target:  5'- gCCCaGAgcgcccAGAAcGGCCGCCGGGGCc- -3'
miRNA:   3'- aGGGgCU------UCUUcUCGGCGGCUCUGuu -5'
10797 3' -57.3 NC_002794.1 + 145922 0.69 0.736296
Target:  5'- gCgCCGAgcGGAGGGGCCGgCGAGAg-- -3'
miRNA:   3'- aGgGGCU--UCUUCUCGGCgGCUCUguu -5'
10797 3' -57.3 NC_002794.1 + 145789 0.67 0.856895
Target:  5'- gUCCCCGGccggcucGGAcGAcgacgccGCCGCCGGcGGCGAg -3'
miRNA:   3'- -AGGGGCU-------UCUuCU-------CGGCGGCU-CUGUU- -5'
10797 3' -57.3 NC_002794.1 + 141422 0.66 0.873151
Target:  5'- aCCUCGggGGcggcGGGGgCGCCGGGGg-- -3'
miRNA:   3'- aGGGGCuuCU----UCUCgGCGGCUCUguu -5'
10797 3' -57.3 NC_002794.1 + 137578 0.68 0.818222
Target:  5'- gCCgCCGggGccggagugcgGGGAGCCGCCGccGGCGGu -3'
miRNA:   3'- aGG-GGCuuC----------UUCUCGGCGGCu-CUGUU- -5'
10797 3' -57.3 NC_002794.1 + 136930 0.68 0.800951
Target:  5'- gCCCCG-AGuuGAcGgCGCCGAGAUAGu -3'
miRNA:   3'- aGGGGCuUCuuCU-CgGCGGCUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 133989 0.75 0.408992
Target:  5'- cCCUCGAAGAGGucGGUCGCCGGGuGCGAg -3'
miRNA:   3'- aGGGGCUUCUUC--UCGGCGGCUC-UGUU- -5'
10797 3' -57.3 NC_002794.1 + 133661 0.71 0.637218
Target:  5'- -aCCCGAGGGAGGGUCGCgGGguuuuGACAu -3'
miRNA:   3'- agGGGCUUCUUCUCGGCGgCU-----CUGUu -5'
10797 3' -57.3 NC_002794.1 + 127110 0.66 0.893683
Target:  5'- cUCgCCGAuGAAcagcucGAGCCGCUgaugGAGACGAa -3'
miRNA:   3'- -AGgGGCUuCUU------CUCGGCGG----CUCUGUU- -5'
10797 3' -57.3 NC_002794.1 + 125298 0.68 0.818222
Target:  5'- cUUCCUGAcGGAAGAGCCguucgcccgcGCCGAGcCGGa -3'
miRNA:   3'- -AGGGGCU-UCUUCUCGG----------CGGCUCuGUU- -5'
10797 3' -57.3 NC_002794.1 + 124516 0.66 0.893683
Target:  5'- gCCgCGAGacaAGGAGCCGCCGAcgcuGGCGc -3'
miRNA:   3'- aGGgGCUUc--UUCUCGGCGGCU----CUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.