Results 1 - 8 of 8 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10797 | 5' | -57.3 | NC_002794.1 | + | 90600 | 0.66 | 0.871164 |
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Target: 5'- cGUCgggCCUCGACGGUC-GC-GGUgGAu -3' miRNA: 3'- -UAGaa-GGAGCUGCCAGaCGuCCGgUU- -5' |
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| 10797 | 5' | -57.3 | NC_002794.1 | + | 96866 | 0.66 | 0.866734 |
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Target: 5'- cGUCgugUCCUCGACGGaCgguggcgcuacgggGCAGGCg-- -3' miRNA: 3'- -UAGa--AGGAGCUGCCaGa-------------CGUCCGguu -5' |
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| 10797 | 5' | -57.3 | NC_002794.1 | + | 29200 | 0.66 | 0.856106 |
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Target: 5'- aGUCcgUCCgucCGGCGGUCgGC-GGCCGu -3' miRNA: 3'- -UAGa-AGGa--GCUGCCAGaCGuCCGGUu -5' |
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| 10797 | 5' | -57.3 | NC_002794.1 | + | 107408 | 0.68 | 0.778287 |
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Target: 5'- ---aUCCUCGGCGGcuauguccugggcUCUGCGGcGCCu- -3' miRNA: 3'- uagaAGGAGCUGCC-------------AGACGUC-CGGuu -5' |
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| 10797 | 5' | -57.3 | NC_002794.1 | + | 95292 | 0.68 | 0.764256 |
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Target: 5'- cUCUUCggCGGCGGUCUcccaugccuauaucaGCgAGGCCGAg -3' miRNA: 3'- uAGAAGgaGCUGCCAGA---------------CG-UCCGGUU- -5' |
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| 10797 | 5' | -57.3 | NC_002794.1 | + | 71390 | 0.7 | 0.630868 |
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Target: 5'- ---cUCCUCcACGGUCUGCggcucGGGCCGg -3' miRNA: 3'- uagaAGGAGcUGCCAGACG-----UCCGGUu -5' |
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| 10797 | 5' | -57.3 | NC_002794.1 | + | 100887 | 0.72 | 0.530123 |
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Target: 5'- cGUCgUCCUgGAccucuaccCGGUCUGCAuGGCCAAg -3' miRNA: 3'- -UAGaAGGAgCU--------GCCAGACGU-CCGGUU- -5' |
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| 10797 | 5' | -57.3 | NC_002794.1 | + | 76408 | 1.04 | 0.004587 |
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Target: 5'- gAUCUUCCUCGACGGUCUGCAGGCCAAg -3' miRNA: 3'- -UAGAAGGAGCUGCCAGACGUCCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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