Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10798 | 3' | -50.9 | NC_002794.1 | + | 31170 | 0.66 | 0.995867 |
Target: 5'- uGUUcGCAGGAGAUGCggUCGAugaagaUGUCc -3' miRNA: 3'- -CAGaCGUCCUCUACG--AGUUug----ACAGc -5' |
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10798 | 3' | -50.9 | NC_002794.1 | + | 133970 | 0.66 | 0.995867 |
Target: 5'- cGUCUGCuGGAGAgucgaaccCUCGAAgagGUCGg -3' miRNA: 3'- -CAGACGuCCUCUac------GAGUUUga-CAGC- -5' |
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10798 | 3' | -50.9 | NC_002794.1 | + | 142019 | 0.68 | 0.977246 |
Target: 5'- -gUUGCcGGAGGUGCUUcgcCUGUCGc -3' miRNA: 3'- caGACGuCCUCUACGAGuuuGACAGC- -5' |
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10798 | 3' | -50.9 | NC_002794.1 | + | 31204 | 0.68 | 0.976999 |
Target: 5'- -gCUGCAGGAccucgacGAagcGCUCGAACgUGUCGc -3' miRNA: 3'- caGACGUCCU-------CUa--CGAGUUUG-ACAGC- -5' |
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10798 | 3' | -50.9 | NC_002794.1 | + | 138108 | 0.75 | 0.789305 |
Target: 5'- cGUCUGCAGGAGGgcguggUGCUCGucGCcgGUCu -3' miRNA: 3'- -CAGACGUCCUCU------ACGAGUu-UGa-CAGc -5' |
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10798 | 3' | -50.9 | NC_002794.1 | + | 75762 | 1.1 | 0.009219 |
Target: 5'- uGUCUGCAGGAGAUGCUCAAACUGUCGa -3' miRNA: 3'- -CAGACGUCCUCUACGAGUUUGACAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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