miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10798 5' -59 NC_002794.1 + 112260 0.66 0.857779
Target:  5'- cGGCGG-GACCGGCgucuCGUCCUCggccuccgugucggGCGGCc -3'
miRNA:   3'- -CCGCUgUUGGCCG----GCGGGAGa-------------CGUUG- -5'
10798 5' -59 NC_002794.1 + 64821 0.66 0.857779
Target:  5'- cGGCGGCgAGCCGGC-GCCgaCgaccggacggcgcgGCGGCa -3'
miRNA:   3'- -CCGCUG-UUGGCCGgCGGgaGa-------------CGUUG- -5'
10798 5' -59 NC_002794.1 + 22331 0.66 0.854784
Target:  5'- aGGUGuCAACCGGUuuacgCGCCC---GCAGCc -3'
miRNA:   3'- -CCGCuGUUGGCCG-----GCGGGagaCGUUG- -5'
10798 5' -59 NC_002794.1 + 101600 0.66 0.854784
Target:  5'- gGGCGGguGCCGGCCcGCCgg--GCGGg -3'
miRNA:   3'- -CCGCUguUGGCCGG-CGGgagaCGUUg -5'
10798 5' -59 NC_002794.1 + 20990 0.66 0.854784
Target:  5'- cGGCGGCAGCgaccgCGGCgGCCacagCcacaGCGACa -3'
miRNA:   3'- -CCGCUGUUG-----GCCGgCGGga--Ga---CGUUG- -5'
10798 5' -59 NC_002794.1 + 63265 0.66 0.854784
Target:  5'- cGGaCGACGGCCcuGGCCGUgguuCCUC-GCuGACg -3'
miRNA:   3'- -CC-GCUGUUGG--CCGGCG----GGAGaCG-UUG- -5'
10798 5' -59 NC_002794.1 + 8868 0.66 0.854784
Target:  5'- uGCGAguuccucaCGGCCaGCCGCCUcugUCUGgAACu -3'
miRNA:   3'- cCGCU--------GUUGGcCGGCGGG---AGACgUUG- -5'
10798 5' -59 NC_002794.1 + 66870 0.66 0.854784
Target:  5'- cGCGGCGugCGGCUgaGCCaUC-GCGGCc -3'
miRNA:   3'- cCGCUGUugGCCGG--CGGgAGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 100827 0.66 0.854784
Target:  5'- cGGCGGgGGCCGGCaGCCgggcUUCcGCAccGCg -3'
miRNA:   3'- -CCGCUgUUGGCCGgCGG----GAGaCGU--UG- -5'
10798 5' -59 NC_002794.1 + 102188 0.66 0.854784
Target:  5'- cGGCGAgGACCuGGCgGCCg-CcGUGACg -3'
miRNA:   3'- -CCGCUgUUGG-CCGgCGGgaGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 190931 0.66 0.854784
Target:  5'- cGGCccGCAGCCGGUagcacgGCCC-CaGCAGCa -3'
miRNA:   3'- -CCGc-UGUUGGCCGg-----CGGGaGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 184482 0.66 0.854784
Target:  5'- cGGCGcGCGGggccCCGGaCGCCCgg-GCGGCg -3'
miRNA:   3'- -CCGC-UGUU----GGCCgGCGGGagaCGUUG- -5'
10798 5' -59 NC_002794.1 + 107190 0.66 0.854784
Target:  5'- cGGCGcCGccgccGCCGGCCucGCCCggCgccgccggGCGGCg -3'
miRNA:   3'- -CCGCuGU-----UGGCCGG--CGGGa-Ga-------CGUUG- -5'
10798 5' -59 NC_002794.1 + 113675 0.66 0.854784
Target:  5'- cGCGGCGAgCaGGcCCGCCaccgUCgGCAGCg -3'
miRNA:   3'- cCGCUGUUgG-CC-GGCGGg---AGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 107161 0.66 0.854784
Target:  5'- cGGCGAgGGCC-GCCGCUac--GCGGCg -3'
miRNA:   3'- -CCGCUgUUGGcCGGCGGgagaCGUUG- -5'
10798 5' -59 NC_002794.1 + 143481 0.66 0.854784
Target:  5'- uGGCaGACGaugucGCUGGCCGCggggCUGCAGa -3'
miRNA:   3'- -CCG-CUGU-----UGGCCGGCGgga-GACGUUg -5'
10798 5' -59 NC_002794.1 + 194656 0.66 0.854784
Target:  5'- uGCGuCGGCUGcGCCGgguccCCCUCcgggUGCGACa -3'
miRNA:   3'- cCGCuGUUGGC-CGGC-----GGGAG----ACGUUG- -5'
10798 5' -59 NC_002794.1 + 12796 0.66 0.847166
Target:  5'- cGUGACGAUCGGCCcgggGCCCg-UGCu-- -3'
miRNA:   3'- cCGCUGUUGGCCGG----CGGGagACGuug -5'
10798 5' -59 NC_002794.1 + 138147 0.66 0.847166
Target:  5'- cGGCGguuucuugcGCAGCCGGCauuugaCGCUCUUgaccucgGCGGCc -3'
miRNA:   3'- -CCGC---------UGUUGGCCG------GCGGGAGa------CGUUG- -5'
10798 5' -59 NC_002794.1 + 151673 0.66 0.847166
Target:  5'- gGGUGACGACCgaggguacuugGGUCGCCC-CgccgGCcgAGCg -3'
miRNA:   3'- -CCGCUGUUGG-----------CCGGCGGGaGa---CG--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.