miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10798 5' -59 NC_002794.1 + 75801 1.1 0.001606
Target:  5'- cGGCGACAACCGGCCGCCCUCUGCAACc -3'
miRNA:   3'- -CCGCUGUUGGCCGGCGGGAGACGUUG- -5'
10798 5' -59 NC_002794.1 + 70231 0.85 0.0909
Target:  5'- gGGCgGGCGGCCGGCCGCCC-C-GCAGCa -3'
miRNA:   3'- -CCG-CUGUUGGCCGGCGGGaGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 11862 0.81 0.162012
Target:  5'- cGGCGACGACCGcCCGCCC-C-GCGACg -3'
miRNA:   3'- -CCGCUGUUGGCcGGCGGGaGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 153134 0.79 0.21495
Target:  5'- uGGCGGCAGcggguCCGGaacggccuuuuucaCCGCCUUCUGCGACu -3'
miRNA:   3'- -CCGCUGUU-----GGCC--------------GGCGGGAGACGUUG- -5'
10798 5' -59 NC_002794.1 + 33457 0.78 0.232362
Target:  5'- gGGCGGCcGCCGGaCgCGCCCacgccgCUGCAGCu -3'
miRNA:   3'- -CCGCUGuUGGCC-G-GCGGGa-----GACGUUG- -5'
10798 5' -59 NC_002794.1 + 79006 0.78 0.242916
Target:  5'- cGCGGCGACuccaucccgcccuCGGCCGCCUUCUGcCGGCc -3'
miRNA:   3'- cCGCUGUUG-------------GCCGGCGGGAGAC-GUUG- -5'
10798 5' -59 NC_002794.1 + 119513 0.77 0.255041
Target:  5'- cGGCGGCGcggaGCCGGCCGCggaccCCUCguccGCGGCc -3'
miRNA:   3'- -CCGCUGU----UGGCCGGCG-----GGAGa---CGUUG- -5'
10798 5' -59 NC_002794.1 + 38160 0.77 0.267047
Target:  5'- aGGCGAgCAGgCGGCUGCgCUCgGCGACg -3'
miRNA:   3'- -CCGCU-GUUgGCCGGCGgGAGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 13787 0.77 0.267047
Target:  5'- gGGUGGCu-CCGGCCGUCUUC-GCGACg -3'
miRNA:   3'- -CCGCUGuuGGCCGGCGGGAGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 127360 0.76 0.299054
Target:  5'- cGGCGGCGGCgCGGCCGCUCg-UGuCGGCg -3'
miRNA:   3'- -CCGCUGUUG-GCCGGCGGGagAC-GUUG- -5'
10798 5' -59 NC_002794.1 + 32307 0.76 0.310593
Target:  5'- cGGCGGCcgcGCCGGCCgcggccggagacaaGCCCUCcGCGAUc -3'
miRNA:   3'- -CCGCUGu--UGGCCGG--------------CGGGAGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 12228 0.75 0.333951
Target:  5'- cGGCGGC-GCCGGCggCGCCgUCcGCGGCg -3'
miRNA:   3'- -CCGCUGuUGGCCG--GCGGgAGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 80493 0.75 0.333951
Target:  5'- uGGCGcACcACCGGCaCGUCUUCUGCGccGCg -3'
miRNA:   3'- -CCGC-UGuUGGCCG-GCGGGAGACGU--UG- -5'
10798 5' -59 NC_002794.1 + 60222 0.75 0.371738
Target:  5'- cGCGACGccGCCGaGCgCGCCCUCUaCGACc -3'
miRNA:   3'- cCGCUGU--UGGC-CG-GCGGGAGAcGUUG- -5'
10798 5' -59 NC_002794.1 + 39095 0.74 0.378842
Target:  5'- gGGCGACAGCCuGUCGUgcuuccucuacauCCUCUGCAu- -3'
miRNA:   3'- -CCGCUGUUGGcCGGCG-------------GGAGACGUug -5'
10798 5' -59 NC_002794.1 + 143560 0.74 0.395768
Target:  5'- cGGUGGCccAGCCGugcgcGCCGUCCUCgGCGGCg -3'
miRNA:   3'- -CCGCUG--UUGGC-----CGGCGGGAGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 68490 0.74 0.403998
Target:  5'- aGGCGGCcgAGCCGGCCGUgCgggugaUCUGcCAGCg -3'
miRNA:   3'- -CCGCUG--UUGGCCGGCGgG------AGAC-GUUG- -5'
10798 5' -59 NC_002794.1 + 80443 0.74 0.412335
Target:  5'- cGGCGGCcGCCGGCCcgucggcgGCCCgCUGCc-- -3'
miRNA:   3'- -CCGCUGuUGGCCGG--------CGGGaGACGuug -5'
10798 5' -59 NC_002794.1 + 19470 0.74 0.420778
Target:  5'- cGGCGGCGggacccGCCGGUCGCCCgcacCGACg -3'
miRNA:   3'- -CCGCUGU------UGGCCGGCGGGagacGUUG- -5'
10798 5' -59 NC_002794.1 + 63460 0.73 0.437102
Target:  5'- cGGCGACGAUgacgacgaggcggCGGCCGCCgUCgacgacgccGCGGCg -3'
miRNA:   3'- -CCGCUGUUG-------------GCCGGCGGgAGa--------CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.