miRNA display CGI


Results 21 - 40 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10798 5' -59 NC_002794.1 + 75654 0.66 0.847166
Target:  5'- aGCGGCAGCgGcGCCGUCCgCcGCuACa -3'
miRNA:   3'- cCGCUGUUGgC-CGGCGGGaGaCGuUG- -5'
10798 5' -59 NC_002794.1 + 32644 0.66 0.847166
Target:  5'- gGGCGACGACCGgggcgacggcGCCGUCCccgucgUCcGcCAACc -3'
miRNA:   3'- -CCGCUGUUGGC----------CGGCGGG------AGaC-GUUG- -5'
10798 5' -59 NC_002794.1 + 109167 0.66 0.847166
Target:  5'- uGGCGACGAgCGGCgGUagcggCggagGCAGCg -3'
miRNA:   3'- -CCGCUGUUgGCCGgCGgga--Ga---CGUUG- -5'
10798 5' -59 NC_002794.1 + 151673 0.66 0.847166
Target:  5'- gGGUGACGACCgaggguacuugGGUCGCCC-CgccgGCcgAGCg -3'
miRNA:   3'- -CCGCUGUUGG-----------CCGGCGGGaGa---CG--UUG- -5'
10798 5' -59 NC_002794.1 + 138147 0.66 0.847166
Target:  5'- cGGCGguuucuugcGCAGCCGGCauuugaCGCUCUUgaccucgGCGGCc -3'
miRNA:   3'- -CCGC---------UGUUGGCCG------GCGGGAGa------CGUUG- -5'
10798 5' -59 NC_002794.1 + 12796 0.66 0.847166
Target:  5'- cGUGACGAUCGGCCcgggGCCCg-UGCu-- -3'
miRNA:   3'- cCGCUGUUGGCCGG----CGGGagACGuug -5'
10798 5' -59 NC_002794.1 + 128318 0.66 0.847166
Target:  5'- cGUGGCGACCGaGcCCGCCCggacGCggUg -3'
miRNA:   3'- cCGCUGUUGGC-C-GGCGGGaga-CGuuG- -5'
10798 5' -59 NC_002794.1 + 150729 0.66 0.846394
Target:  5'- uGCGGCGGCUGaCCGCgUUCccgugcgUGCAGCg -3'
miRNA:   3'- cCGCUGUUGGCcGGCGgGAG-------ACGUUG- -5'
10798 5' -59 NC_002794.1 + 92785 0.66 0.842507
Target:  5'- cGGCGcGCAAggGGCUGCUCUUcaccaaggcgccaagUGCAGCa -3'
miRNA:   3'- -CCGC-UGUUggCCGGCGGGAG---------------ACGUUG- -5'
10798 5' -59 NC_002794.1 + 13265 0.66 0.839366
Target:  5'- gGGCugugGugGAgCGGCCGCUgUUgacgGCGGCa -3'
miRNA:   3'- -CCG----CugUUgGCCGGCGGgAGa---CGUUG- -5'
10798 5' -59 NC_002794.1 + 91479 0.66 0.839366
Target:  5'- gGGCGagcGCGACCaGCUGUUgCUgUGCGACg -3'
miRNA:   3'- -CCGC---UGUUGGcCGGCGG-GAgACGUUG- -5'
10798 5' -59 NC_002794.1 + 23061 0.66 0.839366
Target:  5'- aGUGACGcUCaGcCCGCCCUCgGCGAUg -3'
miRNA:   3'- cCGCUGUuGGcC-GGCGGGAGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 30066 0.66 0.839366
Target:  5'- cGCGGgGuCCGGUCGCCCg--GuCGACg -3'
miRNA:   3'- cCGCUgUuGGCCGGCGGGagaC-GUUG- -5'
10798 5' -59 NC_002794.1 + 112568 0.66 0.839366
Target:  5'- cGGCcAC--CCGGCCGCUCUCcaGCuGCg -3'
miRNA:   3'- -CCGcUGuuGGCCGGCGGGAGa-CGuUG- -5'
10798 5' -59 NC_002794.1 + 80610 0.66 0.839366
Target:  5'- cGGacgGACucugccuGCCGGCCGagcaCCUC-GCGACc -3'
miRNA:   3'- -CCg--CUGu------UGGCCGGCg---GGAGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 53065 0.66 0.839366
Target:  5'- aGGCaGC-GCCGcGCCGCCagCUC-GCGGCa -3'
miRNA:   3'- -CCGcUGuUGGC-CGGCGG--GAGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 124393 0.66 0.839366
Target:  5'- cGGCGGCGcgucGCCGGUcgucggggCGCCgUCcGCcGCg -3'
miRNA:   3'- -CCGCUGU----UGGCCG--------GCGGgAGaCGuUG- -5'
10798 5' -59 NC_002794.1 + 194763 0.66 0.839366
Target:  5'- cGGCGACugcuccgagaacGGCCGGCaCGCgCgCaGCGGCu -3'
miRNA:   3'- -CCGCUG------------UUGGCCG-GCGgGaGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 177990 0.66 0.839366
Target:  5'- cGCGGCAuccguCUGGUU-CCgUCUGCAGCg -3'
miRNA:   3'- cCGCUGUu----GGCCGGcGGgAGACGUUG- -5'
10798 5' -59 NC_002794.1 + 78013 0.66 0.838576
Target:  5'- cGGCGGCGccgucgggagaacGCCcgccGCCGCCCUCgccGUcagAACg -3'
miRNA:   3'- -CCGCUGU-------------UGGc---CGGCGGGAGa--CG---UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.