miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10798 5' -59 NC_002794.1 + 790 0.68 0.724651
Target:  5'- cGGUGcCAACCGuGCCGUCCgg-GCGGu -3'
miRNA:   3'- -CCGCuGUUGGC-CGGCGGGagaCGUUg -5'
10798 5' -59 NC_002794.1 + 1493 0.7 0.607173
Target:  5'- aGGCGGCGACCGGCCuuauacgggGUCCggagGCGu- -3'
miRNA:   3'- -CCGCUGUUGGCCGG---------CGGGaga-CGUug -5'
10798 5' -59 NC_002794.1 + 5676 0.68 0.752892
Target:  5'- cGGcCGAUGACCugaucaacauGGaCGCCUUCUGUGACg -3'
miRNA:   3'- -CC-GCUGUUGG----------CCgGCGGGAGACGUUG- -5'
10798 5' -59 NC_002794.1 + 8315 0.68 0.752892
Target:  5'- aGGCGGCAccGCCGcGCCccgcgccaaacGCCCcaagUGCAGCc -3'
miRNA:   3'- -CCGCUGU--UGGC-CGG-----------CGGGag--ACGUUG- -5'
10798 5' -59 NC_002794.1 + 8868 0.66 0.854784
Target:  5'- uGCGAguuccucaCGGCCaGCCGCCUcugUCUGgAACu -3'
miRNA:   3'- cCGCU--------GUUGGcCGGCGGG---AGACgUUG- -5'
10798 5' -59 NC_002794.1 + 10320 0.69 0.695741
Target:  5'- -cCGACGACuCGGCCGUCgUCggcgccGCGACc -3'
miRNA:   3'- ccGCUGUUG-GCCGGCGGgAGa-----CGUUG- -5'
10798 5' -59 NC_002794.1 + 11573 0.66 0.847166
Target:  5'- aGgGGCAACUGGuCUGCCCcgCgGUGACg -3'
miRNA:   3'- cCgCUGUUGGCC-GGCGGGa-GaCGUUG- -5'
10798 5' -59 NC_002794.1 + 11862 0.81 0.162012
Target:  5'- cGGCGACGACCGcCCGCCC-C-GCGACg -3'
miRNA:   3'- -CCGCUGUUGGCcGGCGGGaGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 12190 0.68 0.724651
Target:  5'- cGCcGCGGCCGGgCGCCgCUCggacgugccgGCGGCg -3'
miRNA:   3'- cCGcUGUUGGCCgGCGG-GAGa---------CGUUG- -5'
10798 5' -59 NC_002794.1 + 12228 0.75 0.333951
Target:  5'- cGGCGGC-GCCGGCggCGCCgUCcGCGGCg -3'
miRNA:   3'- -CCGCUGuUGGCCG--GCGGgAGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 12730 0.68 0.743567
Target:  5'- cGGCGACGAgggcCCGGuCCGCUaccaggagCUGCcGCu -3'
miRNA:   3'- -CCGCUGUU----GGCC-GGCGGga------GACGuUG- -5'
10798 5' -59 NC_002794.1 + 12796 0.66 0.847166
Target:  5'- cGUGACGAUCGGCCcgggGCCCg-UGCu-- -3'
miRNA:   3'- cCGCUGUUGGCCGG----CGGGagACGuug -5'
10798 5' -59 NC_002794.1 + 13265 0.66 0.839366
Target:  5'- gGGCugugGugGAgCGGCCGCUgUUgacgGCGGCa -3'
miRNA:   3'- -CCG----CugUUgGCCGGCGGgAGa---CGUUG- -5'
10798 5' -59 NC_002794.1 + 13787 0.77 0.267047
Target:  5'- gGGUGGCu-CCGGCCGUCUUC-GCGACg -3'
miRNA:   3'- -CCGCUGuuGGCCGGCGGGAGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 14495 0.67 0.780242
Target:  5'- cGCGGCGG-CGGcCCGCgCUC-GCGGCg -3'
miRNA:   3'- cCGCUGUUgGCC-GGCGgGAGaCGUUG- -5'
10798 5' -59 NC_002794.1 + 14681 0.71 0.567949
Target:  5'- cGGCGGCggUCGcGCUGCUC-CUGaCGGCg -3'
miRNA:   3'- -CCGCUGuuGGC-CGGCGGGaGAC-GUUG- -5'
10798 5' -59 NC_002794.1 + 16305 0.68 0.752892
Target:  5'- uGGCGGCcgcGGCCGGCUGgauCCCcCUGCc-- -3'
miRNA:   3'- -CCGCUG---UUGGCCGGC---GGGaGACGuug -5'
10798 5' -59 NC_002794.1 + 16902 0.71 0.577706
Target:  5'- cGCGACAGCCGcgauccgaGCCGCCgaCUGUcgucGGCg -3'
miRNA:   3'- cCGCUGUUGGC--------CGGCGGgaGACG----UUG- -5'
10798 5' -59 NC_002794.1 + 18035 0.67 0.762119
Target:  5'- cGUGACGGCCGccaccCCGCCggaUCUGCuGCa -3'
miRNA:   3'- cCGCUGUUGGCc----GGCGGg--AGACGuUG- -5'
10798 5' -59 NC_002794.1 + 18277 0.72 0.519897
Target:  5'- cGCGGCGccgagccuucgaACCGaGCCGCCCUCU-CGAg -3'
miRNA:   3'- cCGCUGU------------UGGC-CGGCGGGAGAcGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.