miRNA display CGI

Results 1 - 12 of 12 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
108	3'	-53.9	AC_000006.1	+	10077	0.76	0.183419
	Target:  5'- gGCAGCGGuGGUggagGCGCGCGGGAACUc -3' miRNA:   3'- gUGUCGCC-CUAg---CGCGUGUUCUUGAc -5'
108	3'	-53.9	AC_000006.1	+	16018	0.66	0.657088
	Target:  5'- --aAGCGG--UCGCGCGaagAGGAGCUGa -3' miRNA:   3'- gugUCGCCcuAGCGCGUg--UUCUUGAC- -5'
108	3'	-53.9	AC_000006.1	+	13320	0.67	0.576449
	Target:  5'- gGCAGCGGGGccUgGUGUgggacgACGAGGACUc -3' miRNA:   3'- gUGUCGCCCU--AgCGCG------UGUUCUUGAc -5'
108	3'	-53.9	AC_000006.1	+	21506	0.67	0.55371
	Target:  5'- gUACA-CGGGGUUGCaGCACuGGAACa- -3' miRNA:   3'- -GUGUcGCCCUAGCG-CGUGuUCUUGac -5'
108	3'	-53.9	AC_000006.1	+	7617	0.68	0.531245
	Target:  5'- gCGCGGCuaGAUCGCGaGCAAGGGCg- -3' miRNA:   3'- -GUGUCGccCUAGCGCgUGUUCUUGac -5'
108	3'	-53.9	AC_000006.1	+	8334	0.69	0.45565
	Target:  5'- gGCAGCGGcGGUuccggcccCGCGgGCAGGGGCg- -3' miRNA:   3'- gUGUCGCC-CUA--------GCGCgUGUUCUUGac -5'
108	3'	-53.9	AC_000006.1	+	8074	0.69	0.445319
	Target:  5'- gCGCGGCGGGGgcggagagCgaagacgaggGCGCGCAguugGGAGCUGu -3' miRNA:   3'- -GUGUCGCCCUa-------G----------CGCGUGU----UCUUGAC- -5'
108	3'	-53.9	AC_000006.1	+	22342	0.7	0.395724
	Target:  5'- gGCAGacucagGGGGUUGCGCACGuucAGGACa- -3' miRNA:   3'- gUGUCg-----CCCUAGCGCGUGU---UCUUGac -5'
108	3'	-53.9	AC_000006.1	+	16131	0.75	0.211069
	Target:  5'- aGCcGCGGGAUCaaGCGCGAGGGCg- -3' miRNA:   3'- gUGuCGCCCUAGcgCGUGUUCUUGac -5'
108	3'	-53.9	AC_000006.1	+	17629	0.66	0.618988
	Target:  5'- gCACGGCGG--UCGCcaccggagggggcuGCACAaccGGAGCUGc -3' miRNA:   3'- -GUGUCGCCcuAGCG--------------CGUGU---UCUUGAC- -5'
108	3'	-53.9	AC_000006.1	+	20689	0.71	0.332572
	Target:  5'- cCGCAGCccaGGUCGCGCACGAuGGACg- -3' miRNA:   3'- -GUGUCGcc-CUAGCGCGUGUU-CUUGac -5'
108	3'	-53.9	AC_000006.1	+	22141	0.97	0.00497
	Target:  5'- cCACAGCGGGAUCGC-CACAAGAACUGg -3' miRNA:   3'- -GUGUCGCCCUAGCGcGUGUUCUUGAC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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