miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10800 3' -55.6 NC_002794.1 + 112347 0.66 0.95499
Target:  5'- ----cGGCGGCGCC-GGCGGCGGg-- -3'
miRNA:   3'- cuguaCCGCUGUGGaUCGCUGCUgga -5'
10800 3' -55.6 NC_002794.1 + 102125 0.66 0.95499
Target:  5'- ----cGGCGACACCgacAGCGucuuCGugCg -3'
miRNA:   3'- cuguaCCGCUGUGGa--UCGCu---GCugGa -5'
10800 3' -55.6 NC_002794.1 + 121494 0.66 0.95499
Target:  5'- gGACGcGGCcucCGCCggGGCGACGACg- -3'
miRNA:   3'- -CUGUaCCGcu-GUGGa-UCGCUGCUGga -5'
10800 3' -55.6 NC_002794.1 + 83035 0.66 0.95499
Target:  5'- cGCcgGGCGGCACCcacGGCggagGACGAgCg -3'
miRNA:   3'- cUGuaCCGCUGUGGa--UCG----CUGCUgGa -5'
10800 3' -55.6 NC_002794.1 + 110492 0.66 0.952648
Target:  5'- aGGCgGUGGCGGCGCCUggAGaaagucggucgagauCGGCGugCg -3'
miRNA:   3'- -CUG-UACCGCUGUGGA--UC---------------GCUGCugGa -5'
10800 3' -55.6 NC_002794.1 + 1402 0.66 0.951447
Target:  5'- ----cGGUGACACCgccaccgaccuuauaAGgGACGACCg -3'
miRNA:   3'- cuguaCCGCUGUGGa--------------UCgCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 58056 0.66 0.951042
Target:  5'- -cCGUcGGCGGC-CCcGGCGGCGGCg- -3'
miRNA:   3'- cuGUA-CCGCUGuGGaUCGCUGCUGga -5'
10800 3' -55.6 NC_002794.1 + 131190 0.66 0.951042
Target:  5'- aGACAgcaCGGCGCCggGGCGGCG-CCg -3'
miRNA:   3'- -CUGUaccGCUGUGGa-UCGCUGCuGGa -5'
10800 3' -55.6 NC_002794.1 + 8119 0.66 0.951042
Target:  5'- aGCG-GGCGGCgGCCUccucggugaccGGCGACGGCa- -3'
miRNA:   3'- cUGUaCCGCUG-UGGA-----------UCGCUGCUGga -5'
10800 3' -55.6 NC_002794.1 + 24184 0.66 0.951042
Target:  5'- cGACcccGCGGCACCgagaccgagcGCGGCGGCCc -3'
miRNA:   3'- -CUGuacCGCUGUGGau--------CGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 126377 0.66 0.951042
Target:  5'- uGCGUGGgcgcCGGgGCCUGcGCGGCGGCg- -3'
miRNA:   3'- cUGUACC----GCUgUGGAU-CGCUGCUGga -5'
10800 3' -55.6 NC_002794.1 + 44241 0.66 0.951042
Target:  5'- uGCcgGGCGGCucgguGCCgGGCGGCucGGCCg -3'
miRNA:   3'- cUGuaCCGCUG-----UGGaUCGCUG--CUGGa -5'
10800 3' -55.6 NC_002794.1 + 61543 0.66 0.951042
Target:  5'- cGCGaaGaCGACGCCgccgcGGCGGCGGCCg -3'
miRNA:   3'- cUGUacC-GCUGUGGa----UCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 65231 0.66 0.951042
Target:  5'- cACGggcGGCGGuCGCCgcGGCGGCGAUCc -3'
miRNA:   3'- cUGUa--CCGCU-GUGGa-UCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 75788 0.66 0.951042
Target:  5'- --gAUGGCGgaACACC-GGCGACaACCg -3'
miRNA:   3'- cugUACCGC--UGUGGaUCGCUGcUGGa -5'
10800 3' -55.6 NC_002794.1 + 107766 0.66 0.951042
Target:  5'- uGGCuggaGCGcgcuCGCCcGGCGACGACCg -3'
miRNA:   3'- -CUGuac-CGCu---GUGGaUCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 103560 0.66 0.951042
Target:  5'- -cCAUGGCguccGACGCCgUGGCcGACGAgCa -3'
miRNA:   3'- cuGUACCG----CUGUGG-AUCG-CUGCUgGa -5'
10800 3' -55.6 NC_002794.1 + 106992 0.66 0.951042
Target:  5'- cGGCgGUGGCGGCGCUggccgacGCGACGgugcucACCg -3'
miRNA:   3'- -CUG-UACCGCUGUGGau-----CGCUGC------UGGa -5'
10800 3' -55.6 NC_002794.1 + 123161 0.66 0.947297
Target:  5'- aACGUGGaCGACugCUAcgaggagaacgugccCGACGGCCg -3'
miRNA:   3'- cUGUACC-GCUGugGAUc--------------GCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 95043 0.66 0.94687
Target:  5'- --gGUGGCGGCGCCcgaGGCGuACGuggaaaACCUg -3'
miRNA:   3'- cugUACCGCUGUGGa--UCGC-UGC------UGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.