miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10800 3' -55.6 NC_002794.1 + 75311 1.07 0.005257
Target:  5'- cGACAUGGCGACACCUAGCGACGACCUc -3'
miRNA:   3'- -CUGUACCGCUGUGGAUCGCUGCUGGA- -5'
10800 3' -55.6 NC_002794.1 + 107531 0.81 0.241198
Target:  5'- cGGCcgGcGCGGCGCCggcGGCGACGACCg -3'
miRNA:   3'- -CUGuaC-CGCUGUGGa--UCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 179704 0.78 0.372068
Target:  5'- cGACgGUGGCGACGCC-GGCGGCuACCUg -3'
miRNA:   3'- -CUG-UACCGCUGUGGaUCGCUGcUGGA- -5'
10800 3' -55.6 NC_002794.1 + 96299 0.76 0.439976
Target:  5'- cGACAUGGCGuACGCCU-GCGACaacGCCg -3'
miRNA:   3'- -CUGUACCGC-UGUGGAuCGCUGc--UGGa -5'
10800 3' -55.6 NC_002794.1 + 62062 0.76 0.458029
Target:  5'- cGACGccggcGGCGACGCCggcGGCGACGACg- -3'
miRNA:   3'- -CUGUa----CCGCUGUGGa--UCGCUGCUGga -5'
10800 3' -55.6 NC_002794.1 + 12222 0.76 0.47647
Target:  5'- cGGCGUcGGCGGCGCC-GGCGGCG-CCg -3'
miRNA:   3'- -CUGUA-CCGCUGUGGaUCGCUGCuGGa -5'
10800 3' -55.6 NC_002794.1 + 141300 0.74 0.55351
Target:  5'- cACGUGGCG-CGCC-GGCGACGGCa- -3'
miRNA:   3'- cUGUACCGCuGUGGaUCGCUGCUGga -5'
10800 3' -55.6 NC_002794.1 + 37754 0.74 0.58341
Target:  5'- cGGCGcGGCGGCGCC-GGCGggaGCGGCCg -3'
miRNA:   3'- -CUGUaCCGCUGUGGaUCGC---UGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 79430 0.74 0.593454
Target:  5'- gGGCccGGCGGCGgC-GGCGGCGACCg -3'
miRNA:   3'- -CUGuaCCGCUGUgGaUCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 186280 0.73 0.623722
Target:  5'- uGGCGcGGCGGCACCgcGGCcaGGCGGCCg -3'
miRNA:   3'- -CUGUaCCGCUGUGGa-UCG--CUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 108438 0.73 0.633834
Target:  5'- cGACc-GGCGGCACUcgcGGCGGCGGCCc -3'
miRNA:   3'- -CUGuaCCGCUGUGGa--UCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 129934 0.73 0.633834
Target:  5'- -cCGUGGCGACGgCggcGGCGGCGGCUc -3'
miRNA:   3'- cuGUACCGCUGUgGa--UCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 68821 0.72 0.693202
Target:  5'- aGACAgacGGCGACGCCgccGGCgcucgcgguccccGACGACCc -3'
miRNA:   3'- -CUGUa--CCGCUGUGGa--UCG-------------CUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 151654 0.71 0.72381
Target:  5'- cGGCAcuUGGCu-CGCCgccgGGUGACGACCg -3'
miRNA:   3'- -CUGU--ACCGcuGUGGa---UCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 68291 0.71 0.733538
Target:  5'- aGCcgGGCGuacgaACGCCUcGUGGCGGCCg -3'
miRNA:   3'- cUGuaCCGC-----UGUGGAuCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 142409 0.71 0.733538
Target:  5'- cGGCGUcGGCGGCGCCgGGCG-CGAUUa -3'
miRNA:   3'- -CUGUA-CCGCUGUGGaUCGCuGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 20981 0.71 0.743181
Target:  5'- cGGCAgcggcGGCGGCAgCgaccGCGGCGGCCa -3'
miRNA:   3'- -CUGUa----CCGCUGUgGau--CGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 84291 0.71 0.752729
Target:  5'- cGACGgggagcGGCGGCGcuuCCUGGCGACcgGGCCg -3'
miRNA:   3'- -CUGUa-----CCGCUGU---GGAUCGCUG--CUGGa -5'
10800 3' -55.6 NC_002794.1 + 110354 0.71 0.752729
Target:  5'- -cCGUGGCGACGCCUcgucgucgucGGCucuCGGCCg -3'
miRNA:   3'- cuGUACCGCUGUGGA----------UCGcu-GCUGGa -5'
10800 3' -55.6 NC_002794.1 + 146625 0.7 0.771504
Target:  5'- gGACGUcgaaGGCGGUACCgggAGCGGCGACg- -3'
miRNA:   3'- -CUGUA----CCGCUGUGGa--UCGCUGCUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.