miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10800 3' -55.6 NC_002794.1 + 66739 0.66 0.94687
Target:  5'- cGGCgGUGGCGGCGgC--GCGuACGACCg -3'
miRNA:   3'- -CUG-UACCGCUGUgGauCGC-UGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 13808 0.66 0.94687
Target:  5'- cGACG-GGCccgGCCggcGGCGACGGCCUc -3'
miRNA:   3'- -CUGUaCCGcugUGGa--UCGCUGCUGGA- -5'
10800 3' -55.6 NC_002794.1 + 95043 0.66 0.94687
Target:  5'- --gGUGGCGGCGCCcgaGGCGuACGuggaaaACCUg -3'
miRNA:   3'- cugUACCGCUGUGGa--UCGC-UGC------UGGA- -5'
10800 3' -55.6 NC_002794.1 + 71236 0.66 0.94687
Target:  5'- --aGUGGCGGC-C--GGCGugGACCg -3'
miRNA:   3'- cugUACCGCUGuGgaUCGCugCUGGa -5'
10800 3' -55.6 NC_002794.1 + 56907 0.66 0.942469
Target:  5'- cGCGUGGCcacgGGCGCCgGGCuGcCGGCCUc -3'
miRNA:   3'- cUGUACCG----CUGUGGaUCG-CuGCUGGA- -5'
10800 3' -55.6 NC_002794.1 + 57603 0.66 0.942469
Target:  5'- cGCGUGGC--CACCgagaaggcGGcCGACGACCUg -3'
miRNA:   3'- cUGUACCGcuGUGGa-------UC-GCUGCUGGA- -5'
10800 3' -55.6 NC_002794.1 + 123430 0.66 0.942016
Target:  5'- cGACGaGGCGGugaccguCGCCgAGCGGCuGGCCg -3'
miRNA:   3'- -CUGUaCCGCU-------GUGGaUCGCUG-CUGGa -5'
10800 3' -55.6 NC_002794.1 + 63460 0.66 0.942016
Target:  5'- ----cGGCGACgaugacgACgaGGCGGCGGCCg -3'
miRNA:   3'- cuguaCCGCUG-------UGgaUCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 159511 0.66 0.940644
Target:  5'- cGGCGUGGgucgaaucauauacCGACAUcaacggaCUAGUGACGAUCUc -3'
miRNA:   3'- -CUGUACC--------------GCUGUG-------GAUCGCUGCUGGA- -5'
10800 3' -55.6 NC_002794.1 + 76790 0.66 0.937837
Target:  5'- aGCcgGGCGG-GCg-AGCGGCGACCa -3'
miRNA:   3'- cUGuaCCGCUgUGgaUCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 145572 0.66 0.937837
Target:  5'- ----cGGaCGAgCGCCgacggAGCGGCGGCCg -3'
miRNA:   3'- cuguaCC-GCU-GUGGa----UCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 145176 0.66 0.937837
Target:  5'- gGGCAUGGUGucggagaugguCGCC--GCGGCGGCCc -3'
miRNA:   3'- -CUGUACCGCu----------GUGGauCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 82040 0.66 0.937837
Target:  5'- cGCGUgGGCGGCGgC-GGCGGCGGCg- -3'
miRNA:   3'- cUGUA-CCGCUGUgGaUCGCUGCUGga -5'
10800 3' -55.6 NC_002794.1 + 38165 0.66 0.937362
Target:  5'- aGCA-GGCGGCugCgcucGGCGACGAaggcguuCCUg -3'
miRNA:   3'- cUGUaCCGCUGugGa---UCGCUGCU-------GGA- -5'
10800 3' -55.6 NC_002794.1 + 70853 0.66 0.937362
Target:  5'- cGACGUgccggccuccuccGGCGGCGgC-AGCGGCGGCUc -3'
miRNA:   3'- -CUGUA-------------CCGCUGUgGaUCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 146983 0.66 0.93592
Target:  5'- cGAgGUcGGCGcCGCCggccgacgucggcGGCGGCGGCCg -3'
miRNA:   3'- -CUgUA-CCGCuGUGGa------------UCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 145740 0.66 0.932974
Target:  5'- ----cGGCGGCGCCggcaucGaCGGCGACCc -3'
miRNA:   3'- cuguaCCGCUGUGGau----C-GCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 80523 0.66 0.932974
Target:  5'- cGGCGc-GCGACGCCUGGCaccGGCG-CCUc -3'
miRNA:   3'- -CUGUacCGCUGUGGAUCG---CUGCuGGA- -5'
10800 3' -55.6 NC_002794.1 + 116736 0.67 0.927878
Target:  5'- aGCGuguUGGCGACGCCgccgAGgaaGGCGGCUg -3'
miRNA:   3'- cUGU---ACCGCUGUGGa---UCg--CUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 64802 0.67 0.927878
Target:  5'- cGGCGa-GCGACGCCgcggacGGCGGCGAgCCg -3'
miRNA:   3'- -CUGUacCGCUGUGGa-----UCGCUGCU-GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.