miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10800 3' -55.6 NC_002794.1 + 1402 0.66 0.951447
Target:  5'- ----cGGUGACACCgccaccgaccuuauaAGgGACGACCg -3'
miRNA:   3'- cuguaCCGCUGUGGa--------------UCgCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 8119 0.66 0.951042
Target:  5'- aGCG-GGCGGCgGCCUccucggugaccGGCGACGGCa- -3'
miRNA:   3'- cUGUaCCGCUG-UGGA-----------UCGCUGCUGga -5'
10800 3' -55.6 NC_002794.1 + 9069 0.67 0.911191
Target:  5'- cGCA-GGCGAUccgagACUUggagAGCGGCGACCg -3'
miRNA:   3'- cUGUaCCGCUG-----UGGA----UCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 10475 0.67 0.922549
Target:  5'- cGCAccUGGCGACGCCgaAGCGcagucUGGCCg -3'
miRNA:   3'- cUGU--ACCGCUGUGGa-UCGCu----GCUGGa -5'
10800 3' -55.6 NC_002794.1 + 12222 0.76 0.47647
Target:  5'- cGGCGUcGGCGGCGCC-GGCGGCG-CCg -3'
miRNA:   3'- -CUGUA-CCGCUGUGGaUCGCUGCuGGa -5'
10800 3' -55.6 NC_002794.1 + 12907 0.66 0.94687
Target:  5'- cGACugGGcCGAguacCGCCUGGCcgucGACGACCUg -3'
miRNA:   3'- -CUGuaCC-GCU----GUGGAUCG----CUGCUGGA- -5'
10800 3' -55.6 NC_002794.1 + 13295 0.7 0.798736
Target:  5'- cGGCAUGGgCGcuuccccccCGCCcggcgAGCGACGACCg -3'
miRNA:   3'- -CUGUACC-GCu--------GUGGa----UCGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 13808 0.66 0.94687
Target:  5'- cGACG-GGCccgGCCggcGGCGACGGCCUc -3'
miRNA:   3'- -CUGUaCCGcugUGGa--UCGCUGCUGGA- -5'
10800 3' -55.6 NC_002794.1 + 16289 0.68 0.864319
Target:  5'- ---uUGGCGGagucuaGCCUGGCGgccGCGGCCg -3'
miRNA:   3'- cuguACCGCUg-----UGGAUCGC---UGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 18752 0.69 0.832127
Target:  5'- cGACGgccGGCGGCAacgacucUCUAGCcACGACCg -3'
miRNA:   3'- -CUGUa--CCGCUGU-------GGAUCGcUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 19885 0.68 0.878803
Target:  5'- uGCGUGGcCGACcgcuGCCgcgAGC-ACGACCUg -3'
miRNA:   3'- cUGUACC-GCUG----UGGa--UCGcUGCUGGA- -5'
10800 3' -55.6 NC_002794.1 + 20981 0.71 0.743181
Target:  5'- cGGCAgcggcGGCGGCAgCgaccGCGGCGGCCa -3'
miRNA:   3'- -CUGUa----CCGCUGUgGau--CGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 21911 0.67 0.927878
Target:  5'- gGugGUGGCGGCGgagaCgacGGCGGCGGCg- -3'
miRNA:   3'- -CugUACCGCUGUg---Ga--UCGCUGCUGga -5'
10800 3' -55.6 NC_002794.1 + 24019 0.68 0.871666
Target:  5'- -uCAccGCGGCGCCUcGGCGACGGCg- -3'
miRNA:   3'- cuGUacCGCUGUGGA-UCGCUGCUGga -5'
10800 3' -55.6 NC_002794.1 + 24184 0.66 0.951042
Target:  5'- cGACcccGCGGCACCgagaccgagcGCGGCGGCCc -3'
miRNA:   3'- -CUGuacCGCUGUGGau--------CGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 26099 0.67 0.916417
Target:  5'- cGACGgccccGGCGAuCGCCgugGGCcugccucGACGACCg -3'
miRNA:   3'- -CUGUa----CCGCU-GUGGa--UCG-------CUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 29748 0.68 0.878803
Target:  5'- gGACcgGGCGccgagcccGCGCCgAGCGucuCGGCCg -3'
miRNA:   3'- -CUGuaCCGC--------UGUGGaUCGCu--GCUGGa -5'
10800 3' -55.6 NC_002794.1 + 32283 0.68 0.878803
Target:  5'- cGGCGa-GCGACGCCgccgccgccGCGGCGGCCg -3'
miRNA:   3'- -CUGUacCGCUGUGGau-------CGCUGCUGGa -5'
10800 3' -55.6 NC_002794.1 + 32632 0.7 0.798736
Target:  5'- cGACGaagaggggGGCGACgACCggGGCGACGGCg- -3'
miRNA:   3'- -CUGUa-------CCGCUG-UGGa-UCGCUGCUGga -5'
10800 3' -55.6 NC_002794.1 + 32871 0.67 0.911191
Target:  5'- cGGCG-GGCGGCGgCggcGGCGGCGGCa- -3'
miRNA:   3'- -CUGUaCCGCUGUgGa--UCGCUGCUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.