miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10800 5' -57.8 NC_002794.1 + 145882 0.66 0.913772
Target:  5'- -cGGACCGcgagaagcggcgagcGCGACGGgggagUCGaCCgcGCCGAg -3'
miRNA:   3'- cuUCUGGC---------------CGCUGCCa----AGC-GG--UGGCU- -5'
10800 5' -57.8 NC_002794.1 + 183606 0.66 0.911489
Target:  5'- gGggGGCCGcGCG-CGGccggCGCCcCCGc -3'
miRNA:   3'- -CuuCUGGC-CGCuGCCaa--GCGGuGGCu -5'
10800 5' -57.8 NC_002794.1 + 137645 0.66 0.911489
Target:  5'- --uGGCgGGCGcCGGgccuccggCGCCGCUGGu -3'
miRNA:   3'- cuuCUGgCCGCuGCCaa------GCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 137944 0.66 0.911489
Target:  5'- uGGAGGCa-GCGGCGGaugCGUuCGCCGAg -3'
miRNA:   3'- -CUUCUGgcCGCUGCCaa-GCG-GUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 38562 0.66 0.911489
Target:  5'- aGAAGcccGCCGGCgccucGACGGagUCGgCCGCCu- -3'
miRNA:   3'- -CUUC---UGGCCG-----CUGCCa-AGC-GGUGGcu -5'
10800 5' -57.8 NC_002794.1 + 16219 0.66 0.911489
Target:  5'- cGAGGuCCGGCGGgucaGGUcgggcuggcacgUCcCCGCCGAg -3'
miRNA:   3'- -CUUCuGGCCGCUg---CCA------------AGcGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 80412 0.66 0.911489
Target:  5'- --cGGCCcagguGGCGccggGCGGggcCGCCGCCGGc -3'
miRNA:   3'- cuuCUGG-----CCGC----UGCCaa-GCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 35495 0.66 0.911489
Target:  5'- cGAGGACCaGCaGGUGGUg-GCCGCCGu -3'
miRNA:   3'- -CUUCUGGcCG-CUGCCAagCGGUGGCu -5'
10800 5' -57.8 NC_002794.1 + 177591 0.66 0.910913
Target:  5'- cGAAGGCuCGGCGGagccucggguCGGUcgaUCGCUccucgacgacgagGCCGAc -3'
miRNA:   3'- -CUUCUG-GCCGCU----------GCCA---AGCGG-------------UGGCU- -5'
10800 5' -57.8 NC_002794.1 + 106943 0.66 0.907999
Target:  5'- -cGGGCCGGCGGCGccuggagacacgCGUCGCCu- -3'
miRNA:   3'- cuUCUGGCCGCUGCcaa---------GCGGUGGcu -5'
10800 5' -57.8 NC_002794.1 + 37889 0.66 0.905628
Target:  5'- cGggGGCggUGGCGGCGGcagCGgCuCGCCGGc -3'
miRNA:   3'- -CuuCUG--GCCGCUGCCaa-GC-G-GUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 12216 0.66 0.905628
Target:  5'- ---uGCCGGCGGCGucggCGgCGCCGGc -3'
miRNA:   3'- cuucUGGCCGCUGCcaa-GCgGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 100452 0.66 0.905628
Target:  5'- --uGAgCGGCGGCGG--CGCCuucCCGGu -3'
miRNA:   3'- cuuCUgGCCGCUGCCaaGCGGu--GGCU- -5'
10800 5' -57.8 NC_002794.1 + 44744 0.66 0.905628
Target:  5'- nGAGGGCuaagaCGGCGACucgUCGCCGucCCGAc -3'
miRNA:   3'- -CUUCUG-----GCCGCUGccaAGCGGU--GGCU- -5'
10800 5' -57.8 NC_002794.1 + 127349 0.66 0.905628
Target:  5'- cGAGACgcucgCGGCGGCGG--CGCgGCCGc -3'
miRNA:   3'- cUUCUG-----GCCGCUGCCaaGCGgUGGCu -5'
10800 5' -57.8 NC_002794.1 + 156426 0.66 0.905628
Target:  5'- --cGGCCGGCGGgugagagacCGG-UCGC-GCCGAa -3'
miRNA:   3'- cuuCUGGCCGCU---------GCCaAGCGgUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 138103 0.66 0.905628
Target:  5'- -cGGACCgucugcaggagGGCGugGuGcUCGUCGCCGGu -3'
miRNA:   3'- cuUCUGG-----------CCGCugC-CaAGCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 44553 0.66 0.905628
Target:  5'- ---cGCCGGCGGCGGcgC-CCGuuGAc -3'
miRNA:   3'- cuucUGGCCGCUGCCaaGcGGUggCU- -5'
10800 5' -57.8 NC_002794.1 + 79103 0.66 0.905628
Target:  5'- --cGcCCGcGCGAugaCGGccgucuucUUCGCCACCGAg -3'
miRNA:   3'- cuuCuGGC-CGCU---GCC--------AAGCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 114709 0.66 0.90503
Target:  5'- cGAGACggaCGGCGGCGGcggcggcuccgggUUCGUCgaGCCGGc -3'
miRNA:   3'- cUUCUG---GCCGCUGCC-------------AAGCGG--UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.