miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10800 5' -57.8 NC_002794.1 + 75345 1.08 0.003228
Target:  5'- cGAAGACCGGCGACGGUUCGCCACCGAc -3'
miRNA:   3'- -CUUCUGGCCGCUGCCAAGCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 107040 0.78 0.283707
Target:  5'- uGggGACCcccgcgucggaGGCGGCGGgcgcggCGCCGCCGGc -3'
miRNA:   3'- -CuuCUGG-----------CCGCUGCCaa----GCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 141641 0.78 0.317173
Target:  5'- gGAAGGCCGGCGugGccgCgGCCGCCGGc -3'
miRNA:   3'- -CUUCUGGCCGCugCcaaG-CGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 183206 0.77 0.346026
Target:  5'- ---cGCCGGCGGCGcGUUCGUCGCCa- -3'
miRNA:   3'- cuucUGGCCGCUGC-CAAGCGGUGGcu -5'
10800 5' -57.8 NC_002794.1 + 153695 0.77 0.346026
Target:  5'- --cGACCGGCGAcCGGUUuagcgaccgcgaCGUCACCGAc -3'
miRNA:   3'- cuuCUGGCCGCU-GCCAA------------GCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 26653 0.76 0.361142
Target:  5'- cGgcGGCCGGCucgucGGCGGgguggagCGCCACCGAg -3'
miRNA:   3'- -CuuCUGGCCG-----CUGCCaa-----GCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 181230 0.76 0.376711
Target:  5'- cGAGAuCCGGCGACGGcgCGCCuuccACCGc -3'
miRNA:   3'- cUUCU-GGCCGCUGCCaaGCGG----UGGCu -5'
10800 5' -57.8 NC_002794.1 + 130616 0.75 0.417565
Target:  5'- -uGGGCCGGuUGACGGUguucggCGUCGCCGGc -3'
miRNA:   3'- cuUCUGGCC-GCUGCCAa-----GCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 52652 0.75 0.434645
Target:  5'- -cGGAgCGGCGGCaGGcucugCGCCACCGAg -3'
miRNA:   3'- cuUCUgGCCGCUG-CCaa---GCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 99590 0.75 0.434645
Target:  5'- gGAGGGCgCGGCGGCGGcgcgcgcucgCGCCGCCu- -3'
miRNA:   3'- -CUUCUG-GCCGCUGCCaa--------GCGGUGGcu -5'
10800 5' -57.8 NC_002794.1 + 106331 0.75 0.452124
Target:  5'- --cGACgGGuCGACGGUUCGCCGggUCGAc -3'
miRNA:   3'- cuuCUGgCC-GCUGCCAAGCGGU--GGCU- -5'
10800 5' -57.8 NC_002794.1 + 111614 0.74 0.461006
Target:  5'- -cAGGCCGGCGgggccgccGCGGc-CGCCGCCGGu -3'
miRNA:   3'- cuUCUGGCCGC--------UGCCaaGCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 49602 0.74 0.488187
Target:  5'- --cGAUCGGCGACGGcgggCGCCGgCGGc -3'
miRNA:   3'- cuuCUGGCCGCUGCCaa--GCGGUgGCU- -5'
10800 5' -57.8 NC_002794.1 + 149498 0.74 0.488187
Target:  5'- cGggGAUggggaUGGUGACGGggUCGUCGCCGGg -3'
miRNA:   3'- -CuuCUG-----GCCGCUGCCa-AGCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 101652 0.74 0.488187
Target:  5'- -cGGGCgGGCGGCGGUUaGCCcguCCGAa -3'
miRNA:   3'- cuUCUGgCCGCUGCCAAgCGGu--GGCU- -5'
10800 5' -57.8 NC_002794.1 + 107164 0.74 0.505786
Target:  5'- cGAGGGCCGccgcuacGCGGCGGagccggCGCCGCCGc -3'
miRNA:   3'- -CUUCUGGC-------CGCUGCCaa----GCGGUGGCu -5'
10800 5' -57.8 NC_002794.1 + 151650 0.74 0.50672
Target:  5'- --cGGCCGGCacuUGGcUCGCCGCCGGg -3'
miRNA:   3'- cuuCUGGCCGcu-GCCaAGCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 70670 0.74 0.50672
Target:  5'- cGgcGGCCGccGCGGCGGUgacguccugUCGCCGCUGGg -3'
miRNA:   3'- -CuuCUGGC--CGCUGCCA---------AGCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 1639 0.73 0.515158
Target:  5'- cGggGACCGGgGGCGuGUuccUCGCCAaaaaagaggaaguCCGAg -3'
miRNA:   3'- -CuuCUGGCCgCUGC-CA---AGCGGU-------------GGCU- -5'
10800 5' -57.8 NC_002794.1 + 1702 0.73 0.515158
Target:  5'- cGggGACCGGgGGCGuGUuccUCGCCAaaaaagaggaaguCCGAg -3'
miRNA:   3'- -CuuCUGGCCgCUGC-CA---AGCGGU-------------GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.