miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10800 5' -57.8 NC_002794.1 + 181746 0.66 0.902007
Target:  5'- cGAGcGGCCGGCcagcccgcugacgccGAUGGcgccgCGCCGCCGc -3'
miRNA:   3'- -CUU-CUGGCCG---------------CUGCCaa---GCGGUGGCu -5'
10800 5' -57.8 NC_002794.1 + 17015 0.66 0.899549
Target:  5'- cGAGAacacCCGGCGGCGG-UC-CCAUgGAa -3'
miRNA:   3'- cUUCU----GGCCGCUGCCaAGcGGUGgCU- -5'
10800 5' -57.8 NC_002794.1 + 51058 0.66 0.899549
Target:  5'- cGAGACggCGGCGACGG--CGaCCuCCGAg -3'
miRNA:   3'- cUUCUG--GCCGCUGCCaaGC-GGuGGCU- -5'
10800 5' -57.8 NC_002794.1 + 94044 0.66 0.899549
Target:  5'- cGAGAgCGGCGGCGGUgcggggGCgGCgGGg -3'
miRNA:   3'- cUUCUgGCCGCUGCCAag----CGgUGgCU- -5'
10800 5' -57.8 NC_002794.1 + 12154 0.66 0.899549
Target:  5'- --cGAgCGGcCGAucgccCGGaucgUCGCCGCCGAc -3'
miRNA:   3'- cuuCUgGCC-GCU-----GCCa---AGCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 66864 0.66 0.899549
Target:  5'- cGAGGCCgcGGCGuGCGGcugagccaUCGCgGCCGAc -3'
miRNA:   3'- cUUCUGG--CCGC-UGCCa-------AGCGgUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 186296 0.66 0.899549
Target:  5'- --cGGCCaGGCGGcCGG-UCGCCGCgGc -3'
miRNA:   3'- cuuCUGG-CCGCU-GCCaAGCGGUGgCu -5'
10800 5' -57.8 NC_002794.1 + 32279 0.66 0.899549
Target:  5'- --cGAUCGGCGAgCGa--CGCCGCCGc -3'
miRNA:   3'- cuuCUGGCCGCU-GCcaaGCGGUGGCu -5'
10800 5' -57.8 NC_002794.1 + 187766 0.66 0.899549
Target:  5'- ---cGCCGGCGcCGG-UCGCC-UCGAc -3'
miRNA:   3'- cuucUGGCCGCuGCCaAGCGGuGGCU- -5'
10800 5' -57.8 NC_002794.1 + 1576 0.66 0.898929
Target:  5'- cGggGuCCGGgGGCGuGUuccUCGCCAaaaaagaggaaguCCGAg -3'
miRNA:   3'- -CuuCuGGCCgCUGC-CA---AGCGGU-------------GGCU- -5'
10800 5' -57.8 NC_002794.1 + 108438 0.66 0.898929
Target:  5'- --cGACCGGCGgcacucgcggcgGCGGccCGCCggcacggGCCGAg -3'
miRNA:   3'- cuuCUGGCCGC------------UGCCaaGCGG-------UGGCU- -5'
10800 5' -57.8 NC_002794.1 + 2036 0.66 0.898929
Target:  5'- cGggGuCCGGgGGCGuGUuccUCGCCAaaacagaggaaguCCGAg -3'
miRNA:   3'- -CuuCuGGCCgCUGC-CA---AGCGGU-------------GGCU- -5'
10800 5' -57.8 NC_002794.1 + 1911 0.66 0.898929
Target:  5'- cGggGuCCGGgGGCGuGUuccUCGCCAaaaaagaagaaguCCGAg -3'
miRNA:   3'- -CuuCuGGCCgCUGC-CA---AGCGGU-------------GGCU- -5'
10800 5' -57.8 NC_002794.1 + 280 0.66 0.893255
Target:  5'- cGAGGA-CGGCGGCccuGGcgCGCCgaacGCCGGg -3'
miRNA:   3'- -CUUCUgGCCGCUG---CCaaGCGG----UGGCU- -5'
10800 5' -57.8 NC_002794.1 + 76835 0.66 0.893255
Target:  5'- --cGGCCGGCGAUGcg-CGCCGgCCu- -3'
miRNA:   3'- cuuCUGGCCGCUGCcaaGCGGU-GGcu -5'
10800 5' -57.8 NC_002794.1 + 191936 0.66 0.893255
Target:  5'- aGAGGAUCGGCGGCGaGU---CCuCCGAc -3'
miRNA:   3'- -CUUCUGGCCGCUGC-CAagcGGuGGCU- -5'
10800 5' -57.8 NC_002794.1 + 90927 0.66 0.893255
Target:  5'- gGAGGACCacGGCGACGuGggCGggcugugCGCCGAg -3'
miRNA:   3'- -CUUCUGG--CCGCUGC-CaaGCg------GUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 30986 0.66 0.893255
Target:  5'- ----cCCGGCGACGGcggggUcuucgccggacgUCGCCGCCGc -3'
miRNA:   3'- cuucuGGCCGCUGCC-----A------------AGCGGUGGCu -5'
10800 5' -57.8 NC_002794.1 + 76793 0.66 0.886749
Target:  5'- -cGGGCgGGCGAgCGG--CGaCCACCGGa -3'
miRNA:   3'- cuUCUGgCCGCU-GCCaaGC-GGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 106444 0.66 0.886749
Target:  5'- aGAAGGCgGuGCaGGCGGaccUCGUCGCCGu -3'
miRNA:   3'- -CUUCUGgC-CG-CUGCCa--AGCGGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.