miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10800 5' -57.8 NC_002794.1 + 280 0.66 0.893255
Target:  5'- cGAGGA-CGGCGGCccuGGcgCGCCgaacGCCGGg -3'
miRNA:   3'- -CUUCUgGCCGCUG---CCaaGCGG----UGGCU- -5'
10800 5' -57.8 NC_002794.1 + 623 0.68 0.819372
Target:  5'- -cGGcCCGGUGugGcGUUCGCCucCCGu -3'
miRNA:   3'- cuUCuGGCCGCugC-CAAGCGGu-GGCu -5'
10800 5' -57.8 NC_002794.1 + 1388 0.68 0.802497
Target:  5'- gGggGACaaugaGGCGGUgacacCGCCACCGAc -3'
miRNA:   3'- -CuuCUGgccg-CUGCCAa----GCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 1576 0.66 0.898929
Target:  5'- cGggGuCCGGgGGCGuGUuccUCGCCAaaaaagaggaaguCCGAg -3'
miRNA:   3'- -CuuCuGGCCgCUGC-CA---AGCGGU-------------GGCU- -5'
10800 5' -57.8 NC_002794.1 + 1639 0.73 0.515158
Target:  5'- cGggGACCGGgGGCGuGUuccUCGCCAaaaaagaggaaguCCGAg -3'
miRNA:   3'- -CuuCUGGCCgCUGC-CA---AGCGGU-------------GGCU- -5'
10800 5' -57.8 NC_002794.1 + 1702 0.73 0.515158
Target:  5'- cGggGACCGGgGGCGuGUuccUCGCCAaaaaagaggaaguCCGAg -3'
miRNA:   3'- -CuuCUGGCCgCUGC-CA---AGCGGU-------------GGCU- -5'
10800 5' -57.8 NC_002794.1 + 1911 0.66 0.898929
Target:  5'- cGggGuCCGGgGGCGuGUuccUCGCCAaaaaagaagaaguCCGAg -3'
miRNA:   3'- -CuuCuGGCCgCUGC-CA---AGCGGU-------------GGCU- -5'
10800 5' -57.8 NC_002794.1 + 2036 0.66 0.898929
Target:  5'- cGggGuCCGGgGGCGuGUuccUCGCCAaaacagaggaaguCCGAg -3'
miRNA:   3'- -CuuCuGGCCgCUGC-CA---AGCGGU-------------GGCU- -5'
10800 5' -57.8 NC_002794.1 + 3140 0.71 0.661138
Target:  5'- uGAGGAaccgaccCCGGUGACucaaGGUgacUCGCCGCUGAg -3'
miRNA:   3'- -CUUCU-------GGCCGCUG----CCA---AGCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 3556 0.68 0.793841
Target:  5'- cAGGAUgGGgGGCGGUcaaUCGCCccccagcccACCGAg -3'
miRNA:   3'- cUUCUGgCCgCUGCCA---AGCGG---------UGGCU- -5'
10800 5' -57.8 NC_002794.1 + 8140 0.69 0.785049
Target:  5'- --uGACCGGCGACGGcacCGCUucuCCu- -3'
miRNA:   3'- cuuCUGGCCGCUGCCaa-GCGGu--GGcu -5'
10800 5' -57.8 NC_002794.1 + 12154 0.66 0.899549
Target:  5'- --cGAgCGGcCGAucgccCGGaucgUCGCCGCCGAc -3'
miRNA:   3'- cuuCUgGCC-GCU-----GCCa---AGCGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 12216 0.66 0.905628
Target:  5'- ---uGCCGGCGGCGucggCGgCGCCGGc -3'
miRNA:   3'- cuucUGGCCGCUGCcaa-GCgGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 13106 0.69 0.757942
Target:  5'- cGAGGugCGuuCGGCGGggUCGCCGCgCGGc -3'
miRNA:   3'- -CUUCugGCc-GCUGCCa-AGCGGUG-GCU- -5'
10800 5' -57.8 NC_002794.1 + 14780 0.66 0.880034
Target:  5'- uGAGGCCGGCGA-GGccggCGUgACCGc -3'
miRNA:   3'- cUUCUGGCCGCUgCCaa--GCGgUGGCu -5'
10800 5' -57.8 NC_002794.1 + 16219 0.66 0.911489
Target:  5'- cGAGGuCCGGCGGgucaGGUcgggcuggcacgUCcCCGCCGAg -3'
miRNA:   3'- -CUUCuGGCCGCUg---CCA------------AGcGGUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 16540 0.69 0.77613
Target:  5'- ----cCCGGCGucccCGGcgUCGCCACCGc -3'
miRNA:   3'- cuucuGGCCGCu---GCCa-AGCGGUGGCu -5'
10800 5' -57.8 NC_002794.1 + 17015 0.66 0.899549
Target:  5'- cGAGAacacCCGGCGGCGG-UC-CCAUgGAa -3'
miRNA:   3'- cUUCU----GGCCGCUGCCaAGcGGUGgCU- -5'
10800 5' -57.8 NC_002794.1 + 17441 0.66 0.886749
Target:  5'- ---cGCCGGCGcuCGGgccCGCgACCGAg -3'
miRNA:   3'- cuucUGGCCGCu-GCCaa-GCGgUGGCU- -5'
10800 5' -57.8 NC_002794.1 + 17906 0.67 0.858679
Target:  5'- --uGACCGGCGucCGGcagcUCaCCACCGGc -3'
miRNA:   3'- cuuCUGGCCGCu-GCCa---AGcGGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.