miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10801 3' -59.7 NC_002794.1 + 144044 0.65 0.84077
Target:  5'- cGGCgCCUGGCCGCCgucgacuUCUCgcccgaCGCGuccGACg -3'
miRNA:   3'- cCUGaGGACCGGCGG-------AGAG------GCGC---UUG- -5'
10801 3' -59.7 NC_002794.1 + 66910 0.66 0.825669
Target:  5'- cGGucCUCC-GGCCGCCgauccccCUCCGCc--- -3'
miRNA:   3'- -CCu-GAGGaCCGGCGGa------GAGGCGcuug -5'
10801 3' -59.7 NC_002794.1 + 73969 0.66 0.825669
Target:  5'- cGACgCCUcGCCGCCgcuaCUCCGCuacGACg -3'
miRNA:   3'- cCUGaGGAcCGGCGGa---GAGGCGc--UUG- -5'
10801 3' -59.7 NC_002794.1 + 57573 0.66 0.825669
Target:  5'- ---aUCCUGGCCGaCUUCgagucacaggCCGCGcGCg -3'
miRNA:   3'- ccugAGGACCGGC-GGAGa---------GGCGCuUG- -5'
10801 3' -59.7 NC_002794.1 + 85389 0.66 0.825669
Target:  5'- -uGCUCaCggccagaGGCCGCgCUCUCCuCGGGCa -3'
miRNA:   3'- ccUGAG-Ga------CCGGCG-GAGAGGcGCUUG- -5'
10801 3' -59.7 NC_002794.1 + 68361 0.66 0.817484
Target:  5'- aGACgggCCUGcugaucacGCCGCCccccgaccugCUCCGCGAcgGCa -3'
miRNA:   3'- cCUGa--GGAC--------CGGCGGa---------GAGGCGCU--UG- -5'
10801 3' -59.7 NC_002794.1 + 48556 0.66 0.817484
Target:  5'- -cACUCCgccGGCCGCCcgUCCagauggGCGAGCc -3'
miRNA:   3'- ccUGAGGa--CCGGCGGagAGG------CGCUUG- -5'
10801 3' -59.7 NC_002794.1 + 13790 0.66 0.817484
Target:  5'- uGGCUCC-GGCCGUCU--UCGCGAc- -3'
miRNA:   3'- cCUGAGGaCCGGCGGAgaGGCGCUug -5'
10801 3' -59.7 NC_002794.1 + 84968 0.66 0.809145
Target:  5'- cGGAUcCUUGGCC-CCgg-CCGCGAAa -3'
miRNA:   3'- -CCUGaGGACCGGcGGagaGGCGCUUg -5'
10801 3' -59.7 NC_002794.1 + 119900 0.66 0.809145
Target:  5'- cGGA-UCUUGGCgGCCgacgCCGgGGACa -3'
miRNA:   3'- -CCUgAGGACCGgCGGaga-GGCgCUUG- -5'
10801 3' -59.7 NC_002794.1 + 45017 0.66 0.809145
Target:  5'- aGACUCgUGGCCGggugCUCCGCa--- -3'
miRNA:   3'- cCUGAGgACCGGCgga-GAGGCGcuug -5'
10801 3' -59.7 NC_002794.1 + 150540 0.66 0.809145
Target:  5'- cGGGCcggcgCCaUGGCCGUCUCggCGCugGAGCu -3'
miRNA:   3'- -CCUGa----GG-ACCGGCGGAGagGCG--CUUG- -5'
10801 3' -59.7 NC_002794.1 + 104415 0.66 0.809145
Target:  5'- cGGCcucggCCUcGGCCGCCggcccggacgCcgCCGCGGGCg -3'
miRNA:   3'- cCUGa----GGA-CCGGCGGa---------Ga-GGCGCUUG- -5'
10801 3' -59.7 NC_002794.1 + 26108 0.66 0.800659
Target:  5'- cGGCgaucgCCgugGGCCuGCCUCgacgaCCGaCGAACa -3'
miRNA:   3'- cCUGa----GGa--CCGG-CGGAGa----GGC-GCUUG- -5'
10801 3' -59.7 NC_002794.1 + 35003 0.67 0.795501
Target:  5'- cGGGC-CC-GGCacuauguacagcaacCGCCUCcugaUCCGCGGGCu -3'
miRNA:   3'- -CCUGaGGaCCG---------------GCGGAG----AGGCGCUUG- -5'
10801 3' -59.7 NC_002794.1 + 130391 0.67 0.792034
Target:  5'- aGGCcgCCUGGCUGUCggacgCCGCGAc- -3'
miRNA:   3'- cCUGa-GGACCGGCGGaga--GGCGCUug -5'
10801 3' -59.7 NC_002794.1 + 150794 0.67 0.792034
Target:  5'- cGACUCCaGGCC-CCg--CgGCGGACg -3'
miRNA:   3'- cCUGAGGaCCGGcGGagaGgCGCUUG- -5'
10801 3' -59.7 NC_002794.1 + 38503 0.67 0.783277
Target:  5'- cGGCgCC-GGUCGCCgccgcCUCCGCGAu- -3'
miRNA:   3'- cCUGaGGaCCGGCGGa----GAGGCGCUug -5'
10801 3' -59.7 NC_002794.1 + 66837 0.67 0.783277
Target:  5'- cGACUCCggGcGCCGCCgUCggcgCgGCGAGg -3'
miRNA:   3'- cCUGAGGa-C-CGGCGG-AGa---GgCGCUUg -5'
10801 3' -59.7 NC_002794.1 + 137637 0.67 0.783277
Target:  5'- cGACgUCCUGGCgggCGCCgggcCUCCggcgccgcugguGCGGACg -3'
miRNA:   3'- cCUG-AGGACCG---GCGGa---GAGG------------CGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.