miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10801 3' -59.7 NC_002794.1 + 74862 1.12 0.001188
Target:  5'- cGGACUCCUGGCCGCCUCUCCGCGAACg -3'
miRNA:   3'- -CCUGAGGACCGGCGGAGAGGCGCUUG- -5'
10801 3' -59.7 NC_002794.1 + 68679 0.82 0.120722
Target:  5'- -cGCUCCcgUGGCCGCCccaccccagUCUCCGCGAGCu -3'
miRNA:   3'- ccUGAGG--ACCGGCGG---------AGAGGCGCUUG- -5'
10801 3' -59.7 NC_002794.1 + 125894 0.76 0.311388
Target:  5'- uGG-UUCCUGGCCGuCCUCgccuggCCGCGAcucACg -3'
miRNA:   3'- -CCuGAGGACCGGC-GGAGa-----GGCGCU---UG- -5'
10801 3' -59.7 NC_002794.1 + 83952 0.75 0.317589
Target:  5'- uGGACcgCCUgGGCCGCCUggagcgccuggacCgCCGCGAACa -3'
miRNA:   3'- -CCUGa-GGA-CCGGCGGA-------------GaGGCGCUUG- -5'
10801 3' -59.7 NC_002794.1 + 80530 0.75 0.318283
Target:  5'- cGACgCCUGGCaccggCGCCUCUuccCCGCGGACc -3'
miRNA:   3'- cCUGaGGACCG-----GCGGAGA---GGCGCUUG- -5'
10801 3' -59.7 NC_002794.1 + 71807 0.75 0.339653
Target:  5'- cGGGCgcggCgaGGCCGCCUCgUCGCGAGg -3'
miRNA:   3'- -CCUGa---GgaCCGGCGGAGaGGCGCUUg -5'
10801 3' -59.7 NC_002794.1 + 193729 0.74 0.385439
Target:  5'- cGGugUCCUcGCCGCCcgcggCUUCgGCGAGCg -3'
miRNA:   3'- -CCugAGGAcCGGCGGa----GAGG-CGCUUG- -5'
10801 3' -59.7 NC_002794.1 + 183640 0.74 0.401582
Target:  5'- cGACUCgagcagGGCCGCCuUCUCCGCGccgGGCc -3'
miRNA:   3'- cCUGAGga----CCGGCGG-AGAGGCGC---UUG- -5'
10801 3' -59.7 NC_002794.1 + 113073 0.74 0.401582
Target:  5'- aGGuACUCCUGGagCGCCUCg--GCGAACg -3'
miRNA:   3'- -CC-UGAGGACCg-GCGGAGaggCGCUUG- -5'
10801 3' -59.7 NC_002794.1 + 194482 0.73 0.418148
Target:  5'- cGGCUCCUccaGCCGCCcCUCCGCGcccGGCc -3'
miRNA:   3'- cCUGAGGAc--CGGCGGaGAGGCGC---UUG- -5'
10801 3' -59.7 NC_002794.1 + 20628 0.73 0.435124
Target:  5'- cGGCUCC-GGCUGCCUCgacggCUgguGCGAGCa -3'
miRNA:   3'- cCUGAGGaCCGGCGGAGa----GG---CGCUUG- -5'
10801 3' -59.7 NC_002794.1 + 48339 0.72 0.461316
Target:  5'- cGGuACUCCcggUGGUaCGCCUgCUCCGCGAc- -3'
miRNA:   3'- -CC-UGAGG---ACCG-GCGGA-GAGGCGCUug -5'
10801 3' -59.7 NC_002794.1 + 148437 0.72 0.479231
Target:  5'- cGGCUCCUGGCUGgCgcucuacuggcCUCCGCGGcACg -3'
miRNA:   3'- cCUGAGGACCGGCgGa----------GAGGCGCU-UG- -5'
10801 3' -59.7 NC_002794.1 + 89476 0.71 0.525418
Target:  5'- gGGACUCC-GGCCugcgguGUCUC-CCGCGAuGCg -3'
miRNA:   3'- -CCUGAGGaCCGG------CGGAGaGGCGCU-UG- -5'
10801 3' -59.7 NC_002794.1 + 65833 0.71 0.534863
Target:  5'- -aGCUCCUcucGaGCCGUCUCUCCG-GAGCc -3'
miRNA:   3'- ccUGAGGA---C-CGGCGGAGAGGCgCUUG- -5'
10801 3' -59.7 NC_002794.1 + 55012 0.71 0.544369
Target:  5'- cGGGCgUCC--GCCGCCgcgCcgCCGCGAGCa -3'
miRNA:   3'- -CCUG-AGGacCGGCGGa--Ga-GGCGCUUG- -5'
10801 3' -59.7 NC_002794.1 + 91629 0.71 0.553928
Target:  5'- cGAcCUCCUGcGCCGCCUgUCCGagcuGAAg -3'
miRNA:   3'- cCU-GAGGAC-CGGCGGAgAGGCg---CUUg -5'
10801 3' -59.7 NC_002794.1 + 182972 0.71 0.562573
Target:  5'- cGGCUCCUcguucgagccgacGGCCggcGCUUCgCCGCGGGCg -3'
miRNA:   3'- cCUGAGGA-------------CCGG---CGGAGaGGCGCUUG- -5'
10801 3' -59.7 NC_002794.1 + 61502 0.71 0.567392
Target:  5'- aGGaACUCCUcgcccgccggacggcGGCCGCCggCggccgCCGCGAAg -3'
miRNA:   3'- -CC-UGAGGA---------------CCGGCGGa-Ga----GGCGCUUg -5'
10801 3' -59.7 NC_002794.1 + 105419 0.7 0.573188
Target:  5'- cGGcCUCCagggUGGCCGCCg--CCGCGccGGCg -3'
miRNA:   3'- -CCuGAGG----ACCGGCGGagaGGCGC--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.