miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10801 5' -56 NC_002794.1 + 156629 0.66 0.948159
Target:  5'- aUGUgcggCACGCGCuuCGCCA---UCCUa -3'
miRNA:   3'- gACAa---GUGCGCGuuGCGGUggcAGGA- -5'
10801 5' -56 NC_002794.1 + 105440 0.66 0.948159
Target:  5'- ----cCGCGCcgGCGGCGCCGUCGUUCUg -3'
miRNA:   3'- gacaaGUGCG--CGUUGCGGUGGCAGGA- -5'
10801 5' -56 NC_002794.1 + 188565 0.66 0.948159
Target:  5'- gCUGccgCACGUGCcgacacAACGCCcGCCGcUCCa -3'
miRNA:   3'- -GACaa-GUGCGCG------UUGCGG-UGGC-AGGa -5'
10801 5' -56 NC_002794.1 + 151588 0.66 0.948159
Target:  5'- -----gGCGCGCGcCGCCGCCGcgggcccgcgguUCCUc -3'
miRNA:   3'- gacaagUGCGCGUuGCGGUGGC------------AGGA- -5'
10801 5' -56 NC_002794.1 + 82243 0.66 0.948159
Target:  5'- ---gUCAC-CGCcauCGCCACCGUCa- -3'
miRNA:   3'- gacaAGUGcGCGuu-GCGGUGGCAGga -5'
10801 5' -56 NC_002794.1 + 113293 0.66 0.948159
Target:  5'- uCUGcUCG-GCGCAGCGCU--CGUCCg -3'
miRNA:   3'- -GACaAGUgCGCGUUGCGGugGCAGGa -5'
10801 5' -56 NC_002794.1 + 109399 0.66 0.948159
Target:  5'- gCUGgcgauCGCGCGACGCCGgcCCGUgUa -3'
miRNA:   3'- -GACaagu-GCGCGUUGCGGU--GGCAgGa -5'
10801 5' -56 NC_002794.1 + 84218 0.66 0.948159
Target:  5'- -----gGCGCGCucccucucccCGCCACCGUCUc -3'
miRNA:   3'- gacaagUGCGCGuu--------GCGGUGGCAGGa -5'
10801 5' -56 NC_002794.1 + 70657 0.66 0.943853
Target:  5'- uUGgccUCGUGCGCGGCgGCCGCCGcggcggugacgUCCUg -3'
miRNA:   3'- gACa--AGUGCGCGUUG-CGGUGGC-----------AGGA- -5'
10801 5' -56 NC_002794.1 + 187366 0.66 0.943853
Target:  5'- -cGUagGCGCGCAGCagcuCCGCCGaCCc -3'
miRNA:   3'- gaCAagUGCGCGUUGc---GGUGGCaGGa -5'
10801 5' -56 NC_002794.1 + 97095 0.66 0.943853
Target:  5'- ---aUCACGUGCGcgcccuacgACGCCAaguCCGUCUc -3'
miRNA:   3'- gacaAGUGCGCGU---------UGCGGU---GGCAGGa -5'
10801 5' -56 NC_002794.1 + 153646 0.66 0.939319
Target:  5'- ---aUCACaGCGCuuACGCCG-CGUCCg -3'
miRNA:   3'- gacaAGUG-CGCGu-UGCGGUgGCAGGa -5'
10801 5' -56 NC_002794.1 + 56583 0.66 0.939319
Target:  5'- ----cCGCGcCGCGGCGCCcGCCG-CCg -3'
miRNA:   3'- gacaaGUGC-GCGUUGCGG-UGGCaGGa -5'
10801 5' -56 NC_002794.1 + 72158 0.66 0.939319
Target:  5'- ----gUACGCGCAcacGCGCUGCCGguaggCCg -3'
miRNA:   3'- gacaaGUGCGCGU---UGCGGUGGCa----GGa -5'
10801 5' -56 NC_002794.1 + 99799 0.66 0.934557
Target:  5'- -cGagCGCGCGCcgcgGGCGCCggcGCCGUCg- -3'
miRNA:   3'- gaCaaGUGCGCG----UUGCGG---UGGCAGga -5'
10801 5' -56 NC_002794.1 + 46307 0.66 0.934557
Target:  5'- -cGUUCcgaGCGCggcgGCGACGgCGCCGUCg- -3'
miRNA:   3'- gaCAAG---UGCG----CGUUGCgGUGGCAGga -5'
10801 5' -56 NC_002794.1 + 185975 0.66 0.934557
Target:  5'- -cGUUCcCGgGUc-CGCCACCGUCUc -3'
miRNA:   3'- gaCAAGuGCgCGuuGCGGUGGCAGGa -5'
10801 5' -56 NC_002794.1 + 91903 0.66 0.933084
Target:  5'- -aGUUCACGCcgcaGCAccuggccugggccuGCGCgACCaGUCCg -3'
miRNA:   3'- gaCAAGUGCG----CGU--------------UGCGgUGG-CAGGa -5'
10801 5' -56 NC_002794.1 + 32284 0.66 0.929565
Target:  5'- -----gGCGaGCGACGCCGCCG-CCg -3'
miRNA:   3'- gacaagUGCgCGUUGCGGUGGCaGGa -5'
10801 5' -56 NC_002794.1 + 89968 0.66 0.929565
Target:  5'- -cGUUCGgacCGUGguGCGCCGgCGUUCg -3'
miRNA:   3'- gaCAAGU---GCGCguUGCGGUgGCAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.