miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10801 5' -56 NC_002794.1 + 74898 1.07 0.005062
Target:  5'- cCUGUUCACGCGCAACGCCACCGUCCUc -3'
miRNA:   3'- -GACAAGUGCGCGUUGCGGUGGCAGGA- -5'
10801 5' -56 NC_002794.1 + 90469 0.78 0.377581
Target:  5'- -aGgcCGCGCGCGGCgggGCCGCCGUCCc -3'
miRNA:   3'- gaCaaGUGCGCGUUG---CGGUGGCAGGa -5'
10801 5' -56 NC_002794.1 + 44668 0.78 0.377581
Target:  5'- -gGUcCGCGUccGCAGCGCCAUCGUCCa -3'
miRNA:   3'- gaCAaGUGCG--CGUUGCGGUGGCAGGa -5'
10801 5' -56 NC_002794.1 + 152242 0.75 0.510534
Target:  5'- ---gUCGCGCGCAcCGUCGCCGUCg- -3'
miRNA:   3'- gacaAGUGCGCGUuGCGGUGGCAGga -5'
10801 5' -56 NC_002794.1 + 190086 0.75 0.529793
Target:  5'- -cGUUCucguCGCGCAgcucccACGCCccGCCGUCCg -3'
miRNA:   3'- gaCAAGu---GCGCGU------UGCGG--UGGCAGGa -5'
10801 5' -56 NC_002794.1 + 54919 0.73 0.588956
Target:  5'- -cGUUCACGCGCAGCGuCCGCagcgCGaCCg -3'
miRNA:   3'- gaCAAGUGCGCGUUGC-GGUG----GCaGGa -5'
10801 5' -56 NC_002794.1 + 91494 0.73 0.598959
Target:  5'- gCUGUUgcUGUGCGACGCCAUCG-CCUg -3'
miRNA:   3'- -GACAAguGCGCGUUGCGGUGGCaGGA- -5'
10801 5' -56 NC_002794.1 + 170030 0.73 0.608985
Target:  5'- aCUGUUCGCGaauauaaCAGCGaCACCGUCCg -3'
miRNA:   3'- -GACAAGUGCgc-----GUUGCgGUGGCAGGa -5'
10801 5' -56 NC_002794.1 + 90359 0.73 0.618023
Target:  5'- cCUGUgcaccgugCGCGUGCAGgGCCgggucucGCCGUCCg -3'
miRNA:   3'- -GACAa-------GUGCGCGUUgCGG-------UGGCAGGa -5'
10801 5' -56 NC_002794.1 + 103937 0.73 0.619028
Target:  5'- -----aGCGCGCGugGCCGCCG-CCg -3'
miRNA:   3'- gacaagUGCGCGUugCGGUGGCaGGa -5'
10801 5' -56 NC_002794.1 + 114660 0.73 0.628075
Target:  5'- gCUGUUCGCGCGCG-CGCCgguacucggACCGcagggcccggaccUCCUg -3'
miRNA:   3'- -GACAAGUGCGCGUuGCGG---------UGGC-------------AGGA- -5'
10801 5' -56 NC_002794.1 + 150480 0.73 0.62908
Target:  5'- uCUGgcUCACGUGCAccugcgGCGCCGCC-UCCUc -3'
miRNA:   3'- -GACa-AGUGCGCGU------UGCGGUGGcAGGA- -5'
10801 5' -56 NC_002794.1 + 110257 0.73 0.639135
Target:  5'- --uUUCcCGCGCGGCgucgcgacggcgGCCGCCGUCCUc -3'
miRNA:   3'- gacAAGuGCGCGUUG------------CGGUGGCAGGA- -5'
10801 5' -56 NC_002794.1 + 124245 0.72 0.658218
Target:  5'- cCUGUUCcccGCGCGCGGguaguCGCCggccagccgccgcGCCGUCCg -3'
miRNA:   3'- -GACAAG---UGCGCGUU-----GCGG-------------UGGCAGGa -5'
10801 5' -56 NC_002794.1 + 82997 0.72 0.659221
Target:  5'- cCUGgcgccgCACGCGCccgaucuGCGCC-CCGUCCc -3'
miRNA:   3'- -GACaa----GUGCGCGu------UGCGGuGGCAGGa -5'
10801 5' -56 NC_002794.1 + 115285 0.72 0.659221
Target:  5'- gUGgaCACGgggaacggggacCGCuGCGCCGCCGUCCg -3'
miRNA:   3'- gACaaGUGC------------GCGuUGCGGUGGCAGGa -5'
10801 5' -56 NC_002794.1 + 57595 0.72 0.679222
Target:  5'- -aGgcCGCGCGCGugGCCACCGa--- -3'
miRNA:   3'- gaCaaGUGCGCGUugCGGUGGCagga -5'
10801 5' -56 NC_002794.1 + 180723 0.72 0.689171
Target:  5'- -gGUUCagagACGCGCgGACGaCGCCGUCCg -3'
miRNA:   3'- gaCAAG----UGCGCG-UUGCgGUGGCAGGa -5'
10801 5' -56 NC_002794.1 + 182059 0.71 0.699074
Target:  5'- -----uGCGCGUAggGCGCCugCGUCCg -3'
miRNA:   3'- gacaagUGCGCGU--UGCGGugGCAGGa -5'
10801 5' -56 NC_002794.1 + 13138 0.71 0.708923
Target:  5'- -cGcUCGCGCGgGuCGUCGCCGUCCc -3'
miRNA:   3'- gaCaAGUGCGCgUuGCGGUGGCAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.