miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10801 5' -56 NC_002794.1 + 326 0.69 0.836266
Target:  5'- ----cCACGCGC-GCGCCGCCGacagCCc -3'
miRNA:   3'- gacaaGUGCGCGuUGCGGUGGCa---GGa -5'
10801 5' -56 NC_002794.1 + 13138 0.71 0.708923
Target:  5'- -cGcUCGCGCGgGuCGUCGCCGUCCc -3'
miRNA:   3'- gaCaAGUGCGCgUuGCGGUGGCAGGa -5'
10801 5' -56 NC_002794.1 + 16695 0.66 0.924342
Target:  5'- -aGUcUCGCuCGCGAguCGCuCGCCGUCCg -3'
miRNA:   3'- gaCA-AGUGcGCGUU--GCG-GUGGCAGGa -5'
10801 5' -56 NC_002794.1 + 21371 0.66 0.924342
Target:  5'- -----gACGCgGCGGCgGCCGCCGUCUc -3'
miRNA:   3'- gacaagUGCG-CGUUG-CGGUGGCAGGa -5'
10801 5' -56 NC_002794.1 + 29922 0.68 0.859723
Target:  5'- -----gACGgGCAGCgacgaGCCGCCGUCCg -3'
miRNA:   3'- gacaagUGCgCGUUG-----CGGUGGCAGGa -5'
10801 5' -56 NC_002794.1 + 32284 0.66 0.929565
Target:  5'- -----gGCGaGCGACGCCGCCG-CCg -3'
miRNA:   3'- gacaagUGCgCGUUGCGGUGGCaGGa -5'
10801 5' -56 NC_002794.1 + 32575 0.7 0.757051
Target:  5'- ---gUCGCGCGCGGCGgUGCCGgggCCg -3'
miRNA:   3'- gacaAGUGCGCGUUGCgGUGGCa--GGa -5'
10801 5' -56 NC_002794.1 + 34241 0.68 0.888202
Target:  5'- gCUG--CACGCGCGGCuGCCGCCG-Ca- -3'
miRNA:   3'- -GACaaGUGCGCGUUG-CGGUGGCaGga -5'
10801 5' -56 NC_002794.1 + 35948 0.67 0.894787
Target:  5'- ----aCACaCGC-ACGCCACCGUCUc -3'
miRNA:   3'- gacaaGUGcGCGuUGCGGUGGCAGGa -5'
10801 5' -56 NC_002794.1 + 41198 0.67 0.913204
Target:  5'- -cGUcgUCACgGCGCuGCuGCCACCGgCCUc -3'
miRNA:   3'- gaCA--AGUG-CGCGuUG-CGGUGGCaGGA- -5'
10801 5' -56 NC_002794.1 + 44571 0.69 0.828079
Target:  5'- uUGacgUCACGCGgGACcgaGCCACCG-CCg -3'
miRNA:   3'- gACa--AGUGCGCgUUG---CGGUGGCaGGa -5'
10801 5' -56 NC_002794.1 + 44668 0.78 0.377581
Target:  5'- -gGUcCGCGUccGCAGCGCCAUCGUCCa -3'
miRNA:   3'- gaCAaGUGCG--CGUUGCGGUGGCAGGa -5'
10801 5' -56 NC_002794.1 + 46164 0.7 0.775618
Target:  5'- uCUGgaUCGCGCaCAGCGCCGCCGagaCCc -3'
miRNA:   3'- -GACa-AGUGCGcGUUGCGGUGGCa--GGa -5'
10801 5' -56 NC_002794.1 + 46307 0.66 0.934557
Target:  5'- -cGUUCcgaGCGCggcgGCGACGgCGCCGUCg- -3'
miRNA:   3'- gaCAAG---UGCG----CGUUGCgGUGGCAGga -5'
10801 5' -56 NC_002794.1 + 46588 0.67 0.917207
Target:  5'- ----aCACGCGacccugaaccugucCGCCGCCGUCCg -3'
miRNA:   3'- gacaaGUGCGCguu-----------GCGGUGGCAGGa -5'
10801 5' -56 NC_002794.1 + 49100 0.67 0.907291
Target:  5'- ---gUCGCGC-CGGCGCuCGgCGUCCUg -3'
miRNA:   3'- gacaAGUGCGcGUUGCG-GUgGCAGGA- -5'
10801 5' -56 NC_002794.1 + 49374 0.68 0.874381
Target:  5'- aUGUggaagaaGCGCGCcaggcCGCCGCCGUCg- -3'
miRNA:   3'- gACAag-----UGCGCGuu---GCGGUGGCAGga -5'
10801 5' -56 NC_002794.1 + 49451 0.67 0.907291
Target:  5'- -gGUcgUCGC-CGUGGCGCCGCCGUgaCCg -3'
miRNA:   3'- gaCA--AGUGcGCGUUGCGGUGGCA--GGa -5'
10801 5' -56 NC_002794.1 + 52891 0.69 0.828079
Target:  5'- gUGgggUCGaaCGCGGCGCCGCCG-CCg -3'
miRNA:   3'- gACa--AGUgcGCGUUGCGGUGGCaGGa -5'
10801 5' -56 NC_002794.1 + 54919 0.73 0.588956
Target:  5'- -cGUUCACGCGCAGCGuCCGCagcgCGaCCg -3'
miRNA:   3'- gaCAAGUGCGCGUUGC-GGUG----GCaGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.