miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10802 3' -53.8 NC_002794.1 + 60898 0.65 0.983211
Target:  5'- gUCCCCAUCccguuccGCCAcCACCuc-AUCGGc -3'
miRNA:   3'- aAGGGGUAG-------UGGUuGUGGcacUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 150530 0.66 0.981432
Target:  5'- -gCCCCGUagccgggccggCGCCAugGCCGUc-UCGGc -3'
miRNA:   3'- aaGGGGUA-----------GUGGUugUGGCAcuAGCC- -5'
10802 3' -53.8 NC_002794.1 + 10301 0.66 0.981432
Target:  5'- -aCCCCGUCGgcgagagacuCCGACgacucgGCCGUcGUCGGc -3'
miRNA:   3'- aaGGGGUAGU----------GGUUG------UGGCAcUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 58861 0.66 0.981432
Target:  5'- --gCUCGUCGCCGACcggcaGCCGUGcgCGc -3'
miRNA:   3'- aagGGGUAGUGGUUG-----UGGCACuaGCc -5'
10802 3' -53.8 NC_002794.1 + 103556 0.66 0.980809
Target:  5'- -gCCaCCAUggCGuCCGACGCCGUGGccgacgagcagcggUCGGg -3'
miRNA:   3'- aaGG-GGUA--GU-GGUUGUGGCACU--------------AGCC- -5'
10802 3' -53.8 NC_002794.1 + 21447 0.66 0.979294
Target:  5'- gUCUCgCGUCGCuCGGCgucGCCGUGA-CGGc -3'
miRNA:   3'- aAGGG-GUAGUG-GUUG---UGGCACUaGCC- -5'
10802 3' -53.8 NC_002794.1 + 8084 0.66 0.979294
Target:  5'- gUUCCCCAUgGCCAggcccaucucuaGCGCCaccGAgCGGg -3'
miRNA:   3'- -AAGGGGUAgUGGU------------UGUGGca-CUaGCC- -5'
10802 3' -53.8 NC_002794.1 + 39413 0.66 0.976978
Target:  5'- cUUCUUCGUCaggACCGGCcCCGUGGucuUCGGc -3'
miRNA:   3'- -AAGGGGUAG---UGGUUGuGGCACU---AGCC- -5'
10802 3' -53.8 NC_002794.1 + 144914 0.66 0.976978
Target:  5'- -gCCCCGcCGCCGGCACCaaccgcgccaagGUGGUgcUGGa -3'
miRNA:   3'- aaGGGGUaGUGGUUGUGG------------CACUA--GCC- -5'
10802 3' -53.8 NC_002794.1 + 62048 0.66 0.976978
Target:  5'- -gCCCUGUCggugGCCGACGCCGg---CGGc -3'
miRNA:   3'- aaGGGGUAG----UGGUUGUGGCacuaGCC- -5'
10802 3' -53.8 NC_002794.1 + 156688 0.66 0.974477
Target:  5'- cUCgCCCGUCuucucgGCCGcCGCCGUcccaccGAUCGGu -3'
miRNA:   3'- aAG-GGGUAG------UGGUuGUGGCA------CUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 100870 0.66 0.974477
Target:  5'- gUCCUCAUCACgGGgACCGUcGUCcuGGa -3'
miRNA:   3'- aAGGGGUAGUGgUUgUGGCAcUAG--CC- -5'
10802 3' -53.8 NC_002794.1 + 41799 0.66 0.972885
Target:  5'- -aCCCCGaagCAgacguCCAGCGaggcgcccagcaggcCCGUGGUCGGg -3'
miRNA:   3'- aaGGGGUa--GU-----GGUUGU---------------GGCACUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 44976 0.66 0.971784
Target:  5'- gUUCCCUGgcCACCAACGCCuUGGccgugCGGa -3'
miRNA:   3'- -AAGGGGUa-GUGGUUGUGGcACUa----GCC- -5'
10802 3' -53.8 NC_002794.1 + 157449 0.67 0.968892
Target:  5'- aUCCCaaaacguUCACC--CGCCGUGGguuUCGGg -3'
miRNA:   3'- aAGGGgu-----AGUGGuuGUGGCACU---AGCC- -5'
10802 3' -53.8 NC_002794.1 + 43889 0.67 0.968892
Target:  5'- -cCCggCCGUCGCCGGCGucUCGUGAggagCGGc -3'
miRNA:   3'- aaGG--GGUAGUGGUUGU--GGCACUa---GCC- -5'
10802 3' -53.8 NC_002794.1 + 153716 0.67 0.965796
Target:  5'- -aCCgcgaCGUCACCGACGCCGagccGAcCGGg -3'
miRNA:   3'- aaGGg---GUAGUGGUUGUGGCa---CUaGCC- -5'
10802 3' -53.8 NC_002794.1 + 73557 0.67 0.965796
Target:  5'- cUCCUCAUCuucgGCC-GCACCGacugGAUCGa -3'
miRNA:   3'- aAGGGGUAG----UGGuUGUGGCa---CUAGCc -5'
10802 3' -53.8 NC_002794.1 + 63812 0.67 0.965796
Target:  5'- -gUCCCG-CACCGACuuCGcGAUCGGc -3'
miRNA:   3'- aaGGGGUaGUGGUUGugGCaCUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 16333 0.67 0.965796
Target:  5'- -gCCCC-UgGCCGGCACCGacgacGUCGGc -3'
miRNA:   3'- aaGGGGuAgUGGUUGUGGCac---UAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.