miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10802 3' -53.8 NC_002794.1 + 74614 1.07 0.007973
Target:  5'- cUUCCCCAUCACCAACACCGUGAUCGGc -3'
miRNA:   3'- -AAGGGGUAGUGGUUGUGGCACUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 152952 0.77 0.500928
Target:  5'- cUCUCCGgacaCGCCGACGCCuUGGUCGGg -3'
miRNA:   3'- aAGGGGUa---GUGGUUGUGGcACUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 34828 0.77 0.510585
Target:  5'- -aCCCCcUCGCCGGCGCCG-GAgCGGg -3'
miRNA:   3'- aaGGGGuAGUGGUUGUGGCaCUaGCC- -5'
10802 3' -53.8 NC_002794.1 + 142461 0.77 0.520318
Target:  5'- gUCCCCGaugagCGCCGGCACCGUGGacgcgugCGGc -3'
miRNA:   3'- aAGGGGUa----GUGGUUGUGGCACUa------GCC- -5'
10802 3' -53.8 NC_002794.1 + 131504 0.73 0.710801
Target:  5'- --gCCCGUCAUCAcgaccucGC-CCGUGAUCGGc -3'
miRNA:   3'- aagGGGUAGUGGU-------UGuGGCACUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 131396 0.73 0.710801
Target:  5'- --gCCCGUCAUCAcggccucGC-CCGUGAUCGGc -3'
miRNA:   3'- aagGGGUAGUGGU-------UGuGGCACUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 44765 0.73 0.721701
Target:  5'- gUCgCCGUC-CCGACGcagcgccuCCGUGAUCGGc -3'
miRNA:   3'- aAGgGGUAGuGGUUGU--------GGCACUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 17492 0.73 0.741274
Target:  5'- gUUUgCgAUCGCCGACGCCGgccgaGAUCGGc -3'
miRNA:   3'- -AAGgGgUAGUGGUUGUGGCa----CUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 150924 0.73 0.741274
Target:  5'- -aCCUCAUCaACCAACACCGcGGUCu- -3'
miRNA:   3'- aaGGGGUAG-UGGUUGUGGCaCUAGcc -5'
10802 3' -53.8 NC_002794.1 + 98969 0.73 0.760469
Target:  5'- -gCgCCGUCGgCGGCGCCGUGGccUCGGu -3'
miRNA:   3'- aaGgGGUAGUgGUUGUGGCACU--AGCC- -5'
10802 3' -53.8 NC_002794.1 + 131540 0.72 0.768964
Target:  5'- --gCCCGUCAUCAcggccucGC-CCGUGGUCGGc -3'
miRNA:   3'- aagGGGUAGUGGU-------UGuGGCACUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 184118 0.72 0.779213
Target:  5'- -gCCCCGcUCGCCGGCgucacguagACCGUGGcguUCGGa -3'
miRNA:   3'- aaGGGGU-AGUGGUUG---------UGGCACU---AGCC- -5'
10802 3' -53.8 NC_002794.1 + 131356 0.72 0.788392
Target:  5'- uUUCgCCCGugaUCACCGcuucGC-CCGUGGUCGGc -3'
miRNA:   3'- -AAG-GGGU---AGUGGU----UGuGGCACUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 83023 0.72 0.788392
Target:  5'- -gCCCCGUC-CCGGCGCCG-GG-CGGc -3'
miRNA:   3'- aaGGGGUAGuGGUUGUGGCaCUaGCC- -5'
10802 3' -53.8 NC_002794.1 + 141510 0.71 0.832027
Target:  5'- gUCCCUGUCGCUacGACGCC-UGggCGGg -3'
miRNA:   3'- aAGGGGUAGUGG--UUGUGGcACuaGCC- -5'
10802 3' -53.8 NC_002794.1 + 148199 0.71 0.856106
Target:  5'- gUCUCCggCGCCGGCGCgCGcucGAUCGGu -3'
miRNA:   3'- aAGGGGuaGUGGUUGUG-GCa--CUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 188326 0.71 0.856106
Target:  5'- gUCCUCGUCGCCGcCGCCGg---CGGc -3'
miRNA:   3'- aAGGGGUAGUGGUuGUGGCacuaGCC- -5'
10802 3' -53.8 NC_002794.1 + 180913 0.7 0.871164
Target:  5'- -gCCgCGgucUCGCCGGCGCCGUcggaGGUCGGu -3'
miRNA:   3'- aaGGgGU---AGUGGUUGUGGCA----CUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 190952 0.7 0.878377
Target:  5'- -gCCCCAgcagCACCAGCGCC----UCGGg -3'
miRNA:   3'- aaGGGGUa---GUGGUUGUGGcacuAGCC- -5'
10802 3' -53.8 NC_002794.1 + 61858 0.7 0.885371
Target:  5'- -gCCCCAUggacgaCGCCGcGCGCCGUcGUCGGc -3'
miRNA:   3'- aaGGGGUA------GUGGU-UGUGGCAcUAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.