miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10802 3' -53.8 NC_002794.1 + 63402 0.67 0.962489
Target:  5'- cUCCCCGUUucCCGACGgCCG-GA-CGGa -3'
miRNA:   3'- aAGGGGUAGu-GGUUGU-GGCaCUaGCC- -5'
10802 3' -53.8 NC_002794.1 + 13855 0.67 0.962489
Target:  5'- -gCCUCGUCGCCGcCGCCGcGAccCGGu -3'
miRNA:   3'- aaGGGGUAGUGGUuGUGGCaCUa-GCC- -5'
10802 3' -53.8 NC_002794.1 + 65755 0.67 0.958965
Target:  5'- -gCCCCG-CGCCGccgccGC-CCGUGGUgGGg -3'
miRNA:   3'- aaGGGGUaGUGGU-----UGuGGCACUAgCC- -5'
10802 3' -53.8 NC_002794.1 + 91064 0.67 0.958965
Target:  5'- -gCgUCGUCAUguACGCCGUGGUgGGc -3'
miRNA:   3'- aaGgGGUAGUGguUGUGGCACUAgCC- -5'
10802 3' -53.8 NC_002794.1 + 186105 0.67 0.958965
Target:  5'- gUCgCCGUCGCCGcCGCCG-GGUcccCGGa -3'
miRNA:   3'- aAGgGGUAGUGGUuGUGGCaCUA---GCC- -5'
10802 3' -53.8 NC_002794.1 + 24186 0.67 0.955221
Target:  5'- -aCCCCGcggCACCGAgACCGaGcgCGGc -3'
miRNA:   3'- aaGGGGUa--GUGGUUgUGGCaCuaGCC- -5'
10802 3' -53.8 NC_002794.1 + 58052 0.68 0.951251
Target:  5'- gUCCCCGUCGgCGGCcCCGgcggCGGc -3'
miRNA:   3'- aAGGGGUAGUgGUUGuGGCacuaGCC- -5'
10802 3' -53.8 NC_002794.1 + 108512 0.68 0.951251
Target:  5'- cUCUCCGUgGCCuuGCGCCacggccUGAUCGGc -3'
miRNA:   3'- aAGGGGUAgUGGu-UGUGGc-----ACUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 6784 0.68 0.951251
Target:  5'- aUCCCUAUuacCACCAugACaCGUcGAUgGGg -3'
miRNA:   3'- aAGGGGUA---GUGGUugUG-GCA-CUAgCC- -5'
10802 3' -53.8 NC_002794.1 + 18868 0.68 0.937959
Target:  5'- aUCgCCAacgcCACCGACGCCG-GcgCGGa -3'
miRNA:   3'- aAGgGGUa---GUGGUUGUGGCaCuaGCC- -5'
10802 3' -53.8 NC_002794.1 + 59951 0.68 0.93748
Target:  5'- cUUCCCCAUgcacgucUACCGGCACCccgaGGUCGa -3'
miRNA:   3'- -AAGGGGUA-------GUGGUUGUGGca--CUAGCc -5'
10802 3' -53.8 NC_002794.1 + 18906 0.69 0.922548
Target:  5'- cUCCCCGacggCGCCcggacuGGCGCUG-GAUCGGu -3'
miRNA:   3'- aAGGGGUa---GUGG------UUGUGGCaCUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 16625 0.69 0.916936
Target:  5'- -cCCCCcgCGCCAcCACCGUcGUCa- -3'
miRNA:   3'- aaGGGGuaGUGGUuGUGGCAcUAGcc -5'
10802 3' -53.8 NC_002794.1 + 16516 0.69 0.916936
Target:  5'- gUCCCCggcGUCGCCAcCGCCGUcccCGGc -3'
miRNA:   3'- aAGGGG---UAGUGGUuGUGGCAcuaGCC- -5'
10802 3' -53.8 NC_002794.1 + 51967 0.69 0.916936
Target:  5'- -cCUCCGggACCGGCAUCGUGGcgcUCGGc -3'
miRNA:   3'- aaGGGGUagUGGUUGUGGCACU---AGCC- -5'
10802 3' -53.8 NC_002794.1 + 19351 0.69 0.916936
Target:  5'- -aCCCCcUCGCCGcccGCcCCGcccgGAUCGGg -3'
miRNA:   3'- aaGGGGuAGUGGU---UGuGGCa---CUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 190552 0.69 0.911088
Target:  5'- gUCCgcguCCGUCGCCGacaGCACCGcGAaCGGg -3'
miRNA:   3'- aAGG----GGUAGUGGU---UGUGGCaCUaGCC- -5'
10802 3' -53.8 NC_002794.1 + 106217 0.69 0.911088
Target:  5'- gUCCaCCGUCGCCGcgGCCGcGcUCGGg -3'
miRNA:   3'- aAGG-GGUAGUGGUugUGGCaCuAGCC- -5'
10802 3' -53.8 NC_002794.1 + 114052 0.69 0.905005
Target:  5'- gUCgCCGcgCACCAGCuCCGUGAgcucgCGGu -3'
miRNA:   3'- aAGgGGUa-GUGGUUGuGGCACUa----GCC- -5'
10802 3' -53.8 NC_002794.1 + 52911 0.69 0.898689
Target:  5'- -gCCgCCGUCGCCGcCGCCGUcGcUCGGc -3'
miRNA:   3'- aaGG-GGUAGUGGUuGUGGCA-CuAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.