miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10802 3' -53.8 NC_002794.1 + 6784 0.68 0.951251
Target:  5'- aUCCCUAUuacCACCAugACaCGUcGAUgGGg -3'
miRNA:   3'- aAGGGGUA---GUGGUugUG-GCA-CUAgCC- -5'
10802 3' -53.8 NC_002794.1 + 8084 0.66 0.979294
Target:  5'- gUUCCCCAUgGCCAggcccaucucuaGCGCCaccGAgCGGg -3'
miRNA:   3'- -AAGGGGUAgUGGU------------UGUGGca-CUaGCC- -5'
10802 3' -53.8 NC_002794.1 + 10301 0.66 0.981432
Target:  5'- -aCCCCGUCGgcgagagacuCCGACgacucgGCCGUcGUCGGc -3'
miRNA:   3'- aaGGGGUAGU----------GGUUG------UGGCAcUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 13855 0.67 0.962489
Target:  5'- -gCCUCGUCGCCGcCGCCGcGAccCGGu -3'
miRNA:   3'- aaGGGGUAGUGGUuGUGGCaCUa-GCC- -5'
10802 3' -53.8 NC_002794.1 + 16333 0.67 0.965796
Target:  5'- -gCCCC-UgGCCGGCACCGacgacGUCGGc -3'
miRNA:   3'- aaGGGGuAgUGGUUGUGGCac---UAGCC- -5'
10802 3' -53.8 NC_002794.1 + 16516 0.69 0.916936
Target:  5'- gUCCCCggcGUCGCCAcCGCCGUcccCGGc -3'
miRNA:   3'- aAGGGG---UAGUGGUuGUGGCAcuaGCC- -5'
10802 3' -53.8 NC_002794.1 + 16625 0.69 0.916936
Target:  5'- -cCCCCcgCGCCAcCACCGUcGUCa- -3'
miRNA:   3'- aaGGGGuaGUGGUuGUGGCAcUAGcc -5'
10802 3' -53.8 NC_002794.1 + 17492 0.73 0.741274
Target:  5'- gUUUgCgAUCGCCGACGCCGgccgaGAUCGGc -3'
miRNA:   3'- -AAGgGgUAGUGGUUGUGGCa----CUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 18868 0.68 0.937959
Target:  5'- aUCgCCAacgcCACCGACGCCG-GcgCGGa -3'
miRNA:   3'- aAGgGGUa---GUGGUUGUGGCaCuaGCC- -5'
10802 3' -53.8 NC_002794.1 + 18906 0.69 0.922548
Target:  5'- cUCCCCGacggCGCCcggacuGGCGCUG-GAUCGGu -3'
miRNA:   3'- aAGGGGUa---GUGG------UUGUGGCaCUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 19351 0.69 0.916936
Target:  5'- -aCCCCcUCGCCGcccGCcCCGcccgGAUCGGg -3'
miRNA:   3'- aaGGGGuAGUGGU---UGuGGCa---CUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 21447 0.66 0.979294
Target:  5'- gUCUCgCGUCGCuCGGCgucGCCGUGA-CGGc -3'
miRNA:   3'- aAGGG-GUAGUG-GUUG---UGGCACUaGCC- -5'
10802 3' -53.8 NC_002794.1 + 24186 0.67 0.955221
Target:  5'- -aCCCCGcggCACCGAgACCGaGcgCGGc -3'
miRNA:   3'- aaGGGGUa--GUGGUUgUGGCaCuaGCC- -5'
10802 3' -53.8 NC_002794.1 + 34828 0.77 0.510585
Target:  5'- -aCCCCcUCGCCGGCGCCG-GAgCGGg -3'
miRNA:   3'- aaGGGGuAGUGGUUGUGGCaCUaGCC- -5'
10802 3' -53.8 NC_002794.1 + 39413 0.66 0.976978
Target:  5'- cUUCUUCGUCaggACCGGCcCCGUGGucuUCGGc -3'
miRNA:   3'- -AAGGGGUAG---UGGUUGuGGCACU---AGCC- -5'
10802 3' -53.8 NC_002794.1 + 41799 0.66 0.972885
Target:  5'- -aCCCCGaagCAgacguCCAGCGaggcgcccagcaggcCCGUGGUCGGg -3'
miRNA:   3'- aaGGGGUa--GU-----GGUUGU---------------GGCACUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 43889 0.67 0.968892
Target:  5'- -cCCggCCGUCGCCGGCGucUCGUGAggagCGGc -3'
miRNA:   3'- aaGG--GGUAGUGGUUGU--GGCACUa---GCC- -5'
10802 3' -53.8 NC_002794.1 + 44765 0.73 0.721701
Target:  5'- gUCgCCGUC-CCGACGcagcgccuCCGUGAUCGGc -3'
miRNA:   3'- aAGgGGUAGuGGUUGU--------GGCACUAGCC- -5'
10802 3' -53.8 NC_002794.1 + 44976 0.66 0.971784
Target:  5'- gUUCCCUGgcCACCAACGCCuUGGccgugCGGa -3'
miRNA:   3'- -AAGGGGUa-GUGGUUGUGGcACUa----GCC- -5'
10802 3' -53.8 NC_002794.1 + 51967 0.69 0.916936
Target:  5'- -cCUCCGggACCGGCAUCGUGGcgcUCGGc -3'
miRNA:   3'- aaGGGGUagUGGUUGUGGCACU---AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.