miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10802 5' -54.4 NC_002794.1 + 115517 0.66 0.977434
Target:  5'- gGUCCgc-CUGUCGCaGGACGcGGAGGAa -3'
miRNA:   3'- -CAGGacuGGCAGUG-CCUGC-UCUUCUc -5'
10802 5' -54.4 NC_002794.1 + 18826 0.66 0.977434
Target:  5'- -aCCUcGGCCGgCGCGGAgGAGAccucGAGc -3'
miRNA:   3'- caGGA-CUGGCaGUGCCUgCUCUu---CUC- -5'
10802 5' -54.4 NC_002794.1 + 64681 0.66 0.977434
Target:  5'- cUCCUGugCGaCgACGG-CGAGgcGAGc -3'
miRNA:   3'- cAGGACugGCaG-UGCCuGCUCuuCUC- -5'
10802 5' -54.4 NC_002794.1 + 94141 0.66 0.972368
Target:  5'- gGUCC-GACCGcggcggCGCuGGACGGuGggGGGg -3'
miRNA:   3'- -CAGGaCUGGCa-----GUG-CCUGCU-CuuCUC- -5'
10802 5' -54.4 NC_002794.1 + 188033 0.66 0.966529
Target:  5'- -cCCUcGCCGUCcCGGACGcGgcGAGu -3'
miRNA:   3'- caGGAcUGGCAGuGCCUGCuCuuCUC- -5'
10802 5' -54.4 NC_002794.1 + 122341 0.66 0.966529
Target:  5'- -cCCUGGCCGUC-CGGAgcacCGAGGu--- -3'
miRNA:   3'- caGGACUGGCAGuGCCU----GCUCUucuc -5'
10802 5' -54.4 NC_002794.1 + 43888 0.66 0.966529
Target:  5'- -aCCcGGCCGUCGCcGGCGucucguGAGGAGc -3'
miRNA:   3'- caGGaCUGGCAGUGcCUGCu-----CUUCUC- -5'
10802 5' -54.4 NC_002794.1 + 58934 0.66 0.966529
Target:  5'- -gCCUG-CaCGcCAUGGACGAGGAcGAGc -3'
miRNA:   3'- caGGACuG-GCaGUGCCUGCUCUU-CUC- -5'
10802 5' -54.4 NC_002794.1 + 71773 0.67 0.959868
Target:  5'- gGUCCgcGCCGUCGCGcGGCGAGucGc- -3'
miRNA:   3'- -CAGGacUGGCAGUGC-CUGCUCuuCuc -5'
10802 5' -54.4 NC_002794.1 + 51836 0.67 0.948254
Target:  5'- -cCCUGA---UCACGGACGAGAGccGGGa -3'
miRNA:   3'- caGGACUggcAGUGCCUGCUCUU--CUC- -5'
10802 5' -54.4 NC_002794.1 + 798 0.68 0.943934
Target:  5'- -aCCguGCCGUCcggGCGGuCGGGAGGGGg -3'
miRNA:   3'- caGGacUGGCAG---UGCCuGCUCUUCUC- -5'
10802 5' -54.4 NC_002794.1 + 2992 0.68 0.939385
Target:  5'- -aCCUGA--GUCACgGGGCGGGggGAu -3'
miRNA:   3'- caGGACUggCAGUG-CCUGCUCuuCUc -5'
10802 5' -54.4 NC_002794.1 + 161945 0.68 0.939385
Target:  5'- uUCCggGACCGUCggACGGAUGaAGAAacGGGa -3'
miRNA:   3'- cAGGa-CUGGCAG--UGCCUGC-UCUU--CUC- -5'
10802 5' -54.4 NC_002794.1 + 10877 0.68 0.929593
Target:  5'- -gCgUGACCGaCgACGGGCGGGcGGAGg -3'
miRNA:   3'- caGgACUGGCaG-UGCCUGCUCuUCUC- -5'
10802 5' -54.4 NC_002794.1 + 145558 0.68 0.918871
Target:  5'- -gCCcGACCGguUCGCGGACGAGcgccgacGGAGc -3'
miRNA:   3'- caGGaCUGGC--AGUGCCUGCUCu------UCUC- -5'
10802 5' -54.4 NC_002794.1 + 138755 0.69 0.900424
Target:  5'- cUCCgggGGCCGagUCGCggcggucGGugGAGggGAGg -3'
miRNA:   3'- cAGGa--CUGGC--AGUG-------CCugCUCuuCUC- -5'
10802 5' -54.4 NC_002794.1 + 114506 0.7 0.874147
Target:  5'- -gCCgGACCGUCcCGGAgCGAGucGAGc -3'
miRNA:   3'- caGGaCUGGCAGuGCCU-GCUCuuCUC- -5'
10802 5' -54.4 NC_002794.1 + 130319 0.7 0.859412
Target:  5'- uGUCCUGGCCGagACGG-CGGacGAAGGc -3'
miRNA:   3'- -CAGGACUGGCagUGCCuGCU--CUUCUc -5'
10802 5' -54.4 NC_002794.1 + 136112 0.73 0.737088
Target:  5'- cGUCCUGcACC-UgGCGGGCGAagucGAAGAGg -3'
miRNA:   3'- -CAGGAC-UGGcAgUGCCUGCU----CUUCUC- -5'
10802 5' -54.4 NC_002794.1 + 51772 0.73 0.737088
Target:  5'- uUCCUGGCgGgcucguUCAUGGACGAGAucauGGGGg -3'
miRNA:   3'- cAGGACUGgC------AGUGCCUGCUCU----UCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.