miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 3' -58.8 NC_002794.1 + 107385 0.65 0.872411
Target:  5'- uCGCGGCCGucgggcuGGCGCugaucCUCGGCG-GCUa -3'
miRNA:   3'- uGUGCUGGC-------UCGCG-----GAGCUGCuCGAg -5'
10803 3' -58.8 NC_002794.1 + 89785 0.66 0.865994
Target:  5'- gACAUGcCgGAGUuCCUCGACGGGaUCg -3'
miRNA:   3'- -UGUGCuGgCUCGcGGAGCUGCUCgAG- -5'
10803 3' -58.8 NC_002794.1 + 25522 0.66 0.865994
Target:  5'- gACGCuGACgGA--GCCUCGAUGAGC-Cg -3'
miRNA:   3'- -UGUG-CUGgCUcgCGGAGCUGCUCGaG- -5'
10803 3' -58.8 NC_002794.1 + 134284 0.66 0.865994
Target:  5'- gUACGGauaCGAGCGCCucuUCGAUcGGCUg -3'
miRNA:   3'- uGUGCUg--GCUCGCGG---AGCUGcUCGAg -5'
10803 3' -58.8 NC_002794.1 + 94489 0.66 0.865994
Target:  5'- gACGCGGCCGcGgGCCgUGGCGGGgaUg -3'
miRNA:   3'- -UGUGCUGGCuCgCGGaGCUGCUCgaG- -5'
10803 3' -58.8 NC_002794.1 + 10651 0.66 0.865994
Target:  5'- gGCGCGAgcccgaCGAGCGUCUgGAgccgccUGAGCUUc -3'
miRNA:   3'- -UGUGCUg-----GCUCGCGGAgCU------GCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 13293 0.66 0.865994
Target:  5'- -gGCGGCaUGGGCGCUUCccccccgcccGGCGAGCg- -3'
miRNA:   3'- ugUGCUG-GCUCGCGGAG----------CUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 53307 0.66 0.865994
Target:  5'- aGCGguCGGCCG-GCGCCgcgaGAUcGGCUCg -3'
miRNA:   3'- -UGU--GCUGGCuCGCGGag--CUGcUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 81535 0.66 0.865994
Target:  5'- cACGCGcUCGAGCGCUg-GACG-GCUg -3'
miRNA:   3'- -UGUGCuGGCUCGCGGagCUGCuCGAg -5'
10803 3' -58.8 NC_002794.1 + 99801 0.66 0.865994
Target:  5'- aGCGCGcGCCGcgggcgccGGCGCCgUCGGcCGAccuGCUCu -3'
miRNA:   3'- -UGUGC-UGGC--------UCGCGG-AGCU-GCU---CGAG- -5'
10803 3' -58.8 NC_002794.1 + 23934 0.66 0.858679
Target:  5'- -aGCGAuCCGAGCccgGCCgCGGCGcacuuGGCUCc -3'
miRNA:   3'- ugUGCU-GGCUCG---CGGaGCUGC-----UCGAG- -5'
10803 3' -58.8 NC_002794.1 + 44160 0.66 0.858679
Target:  5'- uGCACGugCacGGCGCgagCGGCG-GCUCg -3'
miRNA:   3'- -UGUGCugGc-UCGCGga-GCUGCuCGAG- -5'
10803 3' -58.8 NC_002794.1 + 50414 0.66 0.858679
Target:  5'- gGCACaGACCGAGC-CCUCcGCGguGGC-Ca -3'
miRNA:   3'- -UGUG-CUGGCUCGcGGAGcUGC--UCGaG- -5'
10803 3' -58.8 NC_002794.1 + 49607 0.66 0.858679
Target:  5'- -gGCGACggCGGGCGCCggCGGCGc-CUCg -3'
miRNA:   3'- ugUGCUG--GCUCGCGGa-GCUGCucGAG- -5'
10803 3' -58.8 NC_002794.1 + 151736 0.66 0.858679
Target:  5'- uCGuCGGCCGccGGuCGCCUCG-CGcGCUCg -3'
miRNA:   3'- uGU-GCUGGC--UC-GCGGAGCuGCuCGAG- -5'
10803 3' -58.8 NC_002794.1 + 127810 0.66 0.858679
Target:  5'- gACGcCGAgCGAGCGCCcgucgUCGGCccGAGC-Cg -3'
miRNA:   3'- -UGU-GCUgGCUCGCGG-----AGCUG--CUCGaG- -5'
10803 3' -58.8 NC_002794.1 + 120776 0.66 0.858679
Target:  5'- -uGCGacGCCGAuuCGCCUCGGCGAGg-- -3'
miRNA:   3'- ugUGC--UGGCUc-GCGGAGCUGCUCgag -5'
10803 3' -58.8 NC_002794.1 + 82837 0.66 0.858679
Target:  5'- cGCACGG-CGAGCGCgagCG-CGAGCg- -3'
miRNA:   3'- -UGUGCUgGCUCGCGga-GCuGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 103564 0.66 0.858679
Target:  5'- -gGCGuCCGA-CGCCguggcCGACGAGCa- -3'
miRNA:   3'- ugUGCuGGCUcGCGGa----GCUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 88075 0.66 0.858679
Target:  5'- gGCGgGGCCGcgguuugaacggGGCGUggUGAUGAGCUCc -3'
miRNA:   3'- -UGUgCUGGC------------UCGCGgaGCUGCUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.