Results 1 - 20 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10803 | 3' | -58.8 | NC_002794.1 | + | 107385 | 0.65 | 0.872411 |
Target: 5'- uCGCGGCCGucgggcuGGCGCugaucCUCGGCG-GCUa -3' miRNA: 3'- uGUGCUGGC-------UCGCG-----GAGCUGCuCGAg -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 82837 | 0.66 | 0.858679 |
Target: 5'- cGCACGG-CGAGCGCgagCG-CGAGCg- -3' miRNA: 3'- -UGUGCUgGCUCGCGga-GCuGCUCGag -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 120776 | 0.66 | 0.858679 |
Target: 5'- -uGCGacGCCGAuuCGCCUCGGCGAGg-- -3' miRNA: 3'- ugUGC--UGGCUc-GCGGAGCUGCUCgag -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 127810 | 0.66 | 0.858679 |
Target: 5'- gACGcCGAgCGAGCGCCcgucgUCGGCccGAGC-Cg -3' miRNA: 3'- -UGU-GCUgGCUCGCGG-----AGCUG--CUCGaG- -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 151736 | 0.66 | 0.858679 |
Target: 5'- uCGuCGGCCGccGGuCGCCUCG-CGcGCUCg -3' miRNA: 3'- uGU-GCUGGC--UC-GCGGAGCuGCuCGAG- -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 49607 | 0.66 | 0.858679 |
Target: 5'- -gGCGACggCGGGCGCCggCGGCGc-CUCg -3' miRNA: 3'- ugUGCUG--GCUCGCGGa-GCUGCucGAG- -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 50414 | 0.66 | 0.858679 |
Target: 5'- gGCACaGACCGAGC-CCUCcGCGguGGC-Ca -3' miRNA: 3'- -UGUG-CUGGCUCGcGGAGcUGC--UCGaG- -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 44160 | 0.66 | 0.858679 |
Target: 5'- uGCACGugCacGGCGCgagCGGCG-GCUCg -3' miRNA: 3'- -UGUGCugGc-UCGCGga-GCUGCuCGAG- -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 23934 | 0.66 | 0.858679 |
Target: 5'- -aGCGAuCCGAGCccgGCCgCGGCGcacuuGGCUCc -3' miRNA: 3'- ugUGCU-GGCUCG---CGGaGCUGC-----UCGAG- -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 103564 | 0.66 | 0.858679 |
Target: 5'- -gGCGuCCGA-CGCCguggcCGACGAGCa- -3' miRNA: 3'- ugUGCuGGCUcGCGGa----GCUGCUCGag -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 88075 | 0.66 | 0.858679 |
Target: 5'- gGCGgGGCCGcgguuugaacggGGCGUggUGAUGAGCUCc -3' miRNA: 3'- -UGUgCUGGC------------UCGCGgaGCUGCUCGAG- -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 89785 | 0.66 | 0.865994 |
Target: 5'- gACAUGcCgGAGUuCCUCGACGGGaUCg -3' miRNA: 3'- -UGUGCuGgCUCGcGGAGCUGCUCgAG- -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 81535 | 0.66 | 0.865994 |
Target: 5'- cACGCGcUCGAGCGCUg-GACG-GCUg -3' miRNA: 3'- -UGUGCuGGCUCGCGGagCUGCuCGAg -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 53307 | 0.66 | 0.865994 |
Target: 5'- aGCGguCGGCCG-GCGCCgcgaGAUcGGCUCg -3' miRNA: 3'- -UGU--GCUGGCuCGCGGag--CUGcUCGAG- -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 13293 | 0.66 | 0.865994 |
Target: 5'- -gGCGGCaUGGGCGCUUCccccccgcccGGCGAGCg- -3' miRNA: 3'- ugUGCUG-GCUCGCGGAG----------CUGCUCGag -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 10651 | 0.66 | 0.865994 |
Target: 5'- gGCGCGAgcccgaCGAGCGUCUgGAgccgccUGAGCUUc -3' miRNA: 3'- -UGUGCUg-----GCUCGCGGAgCU------GCUCGAG- -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 94489 | 0.66 | 0.865994 |
Target: 5'- gACGCGGCCGcGgGCCgUGGCGGGgaUg -3' miRNA: 3'- -UGUGCUGGCuCgCGGaGCUGCUCgaG- -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 134284 | 0.66 | 0.865994 |
Target: 5'- gUACGGauaCGAGCGCCucuUCGAUcGGCUg -3' miRNA: 3'- uGUGCUg--GCUCGCGG---AGCUGcUCGAg -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 25522 | 0.66 | 0.865994 |
Target: 5'- gACGCuGACgGA--GCCUCGAUGAGC-Cg -3' miRNA: 3'- -UGUG-CUGgCUcgCGGAGCUGCUCGaG- -5' |
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10803 | 3' | -58.8 | NC_002794.1 | + | 114077 | 0.66 | 0.843484 |
Target: 5'- uCGCGGUCGuGaGCCacgaagaagUCGACGAGCUCg -3' miRNA: 3'- uGUGCUGGCuCgCGG---------AGCUGCUCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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