miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 3' -58.8 NC_002794.1 + 74399 1.08 0.00247
Target:  5'- uACACGACCGAGCGCCUCGACGAGCUCu -3'
miRNA:   3'- -UGUGCUGGCUCGCGGAGCUGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 37936 0.8 0.190681
Target:  5'- cCGCGGCCGcccGUGCCUCGGCGAcucGCUCg -3'
miRNA:   3'- uGUGCUGGCu--CGCGGAGCUGCU---CGAG- -5'
10803 3' -58.8 NC_002794.1 + 58973 0.79 0.214866
Target:  5'- ---aGGCCGAGCGCCUgcgcgaCGACGAGCUg -3'
miRNA:   3'- ugugCUGGCUCGCGGA------GCUGCUCGAg -5'
10803 3' -58.8 NC_002794.1 + 62451 0.78 0.257213
Target:  5'- cGCACGGCgaguucguccuccuCGAggcGCGCCUCGACGAGCg- -3'
miRNA:   3'- -UGUGCUG--------------GCU---CGCGGAGCUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 64107 0.78 0.258994
Target:  5'- gACGCGACCGGcGCGUCugcacgcggUCGACGGGCUg -3'
miRNA:   3'- -UGUGCUGGCU-CGCGG---------AGCUGCUCGAg -5'
10803 3' -58.8 NC_002794.1 + 150603 0.78 0.265003
Target:  5'- -gACGGCCGGGCGCCggcucugCGG-GAGCUCg -3'
miRNA:   3'- ugUGCUGGCUCGCGGa------GCUgCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 118726 0.77 0.271124
Target:  5'- uGCGCGuACUGGGCGCugCUCGGCGcGCUCa -3'
miRNA:   3'- -UGUGC-UGGCUCGCG--GAGCUGCuCGAG- -5'
10803 3' -58.8 NC_002794.1 + 141596 0.77 0.271124
Target:  5'- cCGCGucGCCGGGCGgCUCGGCGAccgGCUCg -3'
miRNA:   3'- uGUGC--UGGCUCGCgGAGCUGCU---CGAG- -5'
10803 3' -58.8 NC_002794.1 + 145519 0.77 0.27673
Target:  5'- uGCGCGAggccggcCCGAGCGCCUCGGgcgcccCGAGCg- -3'
miRNA:   3'- -UGUGCU-------GGCUCGCGGAGCU------GCUCGag -5'
10803 3' -58.8 NC_002794.1 + 145826 0.77 0.289519
Target:  5'- -gGCGAgCCGAGCGCgUCGACGGucgccacGCUCg -3'
miRNA:   3'- ugUGCU-GGCUCGCGgAGCUGCU-------CGAG- -5'
10803 3' -58.8 NC_002794.1 + 37775 0.77 0.305471
Target:  5'- -aGCGGCCGucgucgucggccgcaGGCGCCUCGACGAgacggucGCUCc -3'
miRNA:   3'- ugUGCUGGC---------------UCGCGGAGCUGCU-------CGAG- -5'
10803 3' -58.8 NC_002794.1 + 29764 0.76 0.317173
Target:  5'- cCGCG-CCGAGCGUCUCGGCc-GCUCg -3'
miRNA:   3'- uGUGCuGGCUCGCGGAGCUGcuCGAG- -5'
10803 3' -58.8 NC_002794.1 + 120853 0.76 0.327061
Target:  5'- uGCGCGGCCGucguccAGCGCCUCGgcugguguccgaacgGCGAGgUCa -3'
miRNA:   3'- -UGUGCUGGC------UCGCGGAGC---------------UGCUCgAG- -5'
10803 3' -58.8 NC_002794.1 + 126634 0.76 0.33864
Target:  5'- aGCGCGACCGGGCGCC-CgGACGcGC-Cg -3'
miRNA:   3'- -UGUGCUGGCUCGCGGaG-CUGCuCGaG- -5'
10803 3' -58.8 NC_002794.1 + 46372 0.76 0.33864
Target:  5'- cCACGcucuCCGGGCGCgCUaCGACGAGCUg -3'
miRNA:   3'- uGUGCu---GGCUCGCG-GA-GCUGCUCGAg -5'
10803 3' -58.8 NC_002794.1 + 79299 0.75 0.353527
Target:  5'- uGCGUGGCCGAGCGCCUCGAU---CUCa -3'
miRNA:   3'- -UGUGCUGGCUCGCGGAGCUGcucGAG- -5'
10803 3' -58.8 NC_002794.1 + 113502 0.75 0.36887
Target:  5'- cGCGCGGCCGAGaGCCgCGGaggGAGCUCc -3'
miRNA:   3'- -UGUGCUGGCUCgCGGaGCUg--CUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 176869 0.74 0.400899
Target:  5'- uACGgaGugCGAGCGUCUCGAUcauGGGCUCg -3'
miRNA:   3'- -UGUg-CugGCUCGCGGAGCUG---CUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 61874 0.73 0.443336
Target:  5'- cGCGCG-CCGucgucGGCGCCgcgCGGCGAGCg- -3'
miRNA:   3'- -UGUGCuGGC-----UCGCGGa--GCUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 12192 0.73 0.443336
Target:  5'- cCGCGGCCGGGCGCCgcUCGgACGuGC-Cg -3'
miRNA:   3'- uGUGCUGGCUCGCGG--AGC-UGCuCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.