miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 3' -58.8 NC_002794.1 + 66833 0.73 0.461006
Target:  5'- gGCGCGAcuCCGGGCGCCgccgUCGGCGcGGCg- -3'
miRNA:   3'- -UGUGCU--GGCUCGCGG----AGCUGC-UCGag -5'
10803 3' -58.8 NC_002794.1 + 83879 0.73 0.461006
Target:  5'- gGCGCGACgGccccgggcucGGCGCC-CGACGAGCcCg -3'
miRNA:   3'- -UGUGCUGgC----------UCGCGGaGCUGCUCGaG- -5'
10803 3' -58.8 NC_002794.1 + 121946 0.73 0.461006
Target:  5'- cGCGCuGAUCGAGCGCCUgGAgCGcuccgugcGGCUCg -3'
miRNA:   3'- -UGUG-CUGGCUCGCGGAgCU-GC--------UCGAG- -5'
10803 3' -58.8 NC_002794.1 + 56838 0.73 0.461006
Target:  5'- cCAC-ACCGuGCGCUUCGACGAcCUCa -3'
miRNA:   3'- uGUGcUGGCuCGCGGAGCUGCUcGAG- -5'
10803 3' -58.8 NC_002794.1 + 57487 0.73 0.469078
Target:  5'- cGCGCGACCaGGUgcgcgcgcccgccGCCUaCGGCGAGUUCg -3'
miRNA:   3'- -UGUGCUGGcUCG-------------CGGA-GCUGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 145604 0.73 0.469979
Target:  5'- cCGCGGagUCGGGCGCgaCGAgGAGCUCg -3'
miRNA:   3'- uGUGCU--GGCUCGCGgaGCUgCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 61361 0.73 0.479041
Target:  5'- aGCuCGA-CGAGcCGCugCUCGACGAGCUCa -3'
miRNA:   3'- -UGuGCUgGCUC-GCG--GAGCUGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 100324 0.73 0.488187
Target:  5'- cGCGCGGCCG-GCGCa-CGGCcGGCUCu -3'
miRNA:   3'- -UGUGCUGGCuCGCGgaGCUGcUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 111752 0.72 0.497415
Target:  5'- aGCugGcGCCGcgcGGCGCCgUCGggGCGGGCUCg -3'
miRNA:   3'- -UGugC-UGGC---UCGCGG-AGC--UGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 102704 0.72 0.50672
Target:  5'- -gACGGCCGGGcCGCCg-GACGGGCg- -3'
miRNA:   3'- ugUGCUGGCUC-GCGGagCUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 31972 0.72 0.50672
Target:  5'- gUACGACgucuCGAGCGCCUCGgucugcguggGCGAGC-Cg -3'
miRNA:   3'- uGUGCUG----GCUCGCGGAGC----------UGCUCGaG- -5'
10803 3' -58.8 NC_002794.1 + 186302 0.72 0.50672
Target:  5'- -gGCGGCCGGuCGCCgCGGCGcGCUCg -3'
miRNA:   3'- ugUGCUGGCUcGCGGaGCUGCuCGAG- -5'
10803 3' -58.8 NC_002794.1 + 24193 0.72 0.50672
Target:  5'- gGCACcgaGACCGAGCGCggCGGCccGCUCa -3'
miRNA:   3'- -UGUG---CUGGCUCGCGgaGCUGcuCGAG- -5'
10803 3' -58.8 NC_002794.1 + 93994 0.72 0.50672
Target:  5'- gGCGCGgacGCCG-GCGCCggCGGCGGGC-Cg -3'
miRNA:   3'- -UGUGC---UGGCuCGCGGa-GCUGCUCGaG- -5'
10803 3' -58.8 NC_002794.1 + 181684 0.72 0.50672
Target:  5'- uGCGCgGACCGccGCGCCUCGGCccacacGCUCg -3'
miRNA:   3'- -UGUG-CUGGCu-CGCGGAGCUGcu----CGAG- -5'
10803 3' -58.8 NC_002794.1 + 108372 0.72 0.516099
Target:  5'- -gAgGACCGGGCGCCggagCGGgGAGCg- -3'
miRNA:   3'- ugUgCUGGCUCGCGGa---GCUgCUCGag -5'
10803 3' -58.8 NC_002794.1 + 115828 0.72 0.525547
Target:  5'- cCugGAUCGgcGGgGCC-CGGCGGGCUCg -3'
miRNA:   3'- uGugCUGGC--UCgCGGaGCUGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 34280 0.72 0.525547
Target:  5'- -gGCGGCC-AGCGCCagCGACcggGAGCUCu -3'
miRNA:   3'- ugUGCUGGcUCGCGGa-GCUG---CUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 182990 0.72 0.525547
Target:  5'- -gACGGCCG-GCGCUUCGccGCGGGCg- -3'
miRNA:   3'- ugUGCUGGCuCGCGGAGC--UGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 91609 0.72 0.544632
Target:  5'- cGCGCGGCCGAGgGCCaCGcCGAcCUCc -3'
miRNA:   3'- -UGUGCUGGCUCgCGGaGCuGCUcGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.