miRNA display CGI


Results 21 - 40 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 3' -58.8 NC_002794.1 + 128982 0.66 0.850413
Target:  5'- uGCA-GAuCCGAGCGCucuagCUCGGCGGucgacccGCUCa -3'
miRNA:   3'- -UGUgCU-GGCUCGCG-----GAGCUGCU-------CGAG- -5'
10803 3' -58.8 NC_002794.1 + 98951 0.66 0.850413
Target:  5'- gGCugGggcucguGCUGGGCGCCgUCGGCG-GCg- -3'
miRNA:   3'- -UGugC-------UGGCUCGCGG-AGCUGCuCGag -5'
10803 3' -58.8 NC_002794.1 + 10964 0.66 0.843484
Target:  5'- gGC-CGGCCGAGaCGUC-CGAUGccuGCUCc -3'
miRNA:   3'- -UGuGCUGGCUC-GCGGaGCUGCu--CGAG- -5'
10803 3' -58.8 NC_002794.1 + 41871 0.66 0.843484
Target:  5'- gGCAgGGCCGGGCGCUgccaCGccACGuagcGCUCc -3'
miRNA:   3'- -UGUgCUGGCUCGCGGa---GC--UGCu---CGAG- -5'
10803 3' -58.8 NC_002794.1 + 115045 0.66 0.843484
Target:  5'- -uGCGACCGGGCGgCgggCGGC-AGCg- -3'
miRNA:   3'- ugUGCUGGCUCGCgGa--GCUGcUCGag -5'
10803 3' -58.8 NC_002794.1 + 183158 0.66 0.843484
Target:  5'- cACGCGGCCGGGCuGCC-CGAgccgguCGGGgaCc -3'
miRNA:   3'- -UGUGCUGGCUCG-CGGaGCU------GCUCgaG- -5'
10803 3' -58.8 NC_002794.1 + 137037 0.66 0.843484
Target:  5'- uGCucguCGAUCGGGaucucggggaucUGCCcgUCGGCGGGCUCu -3'
miRNA:   3'- -UGu---GCUGGCUC------------GCGG--AGCUGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 114077 0.66 0.843484
Target:  5'- uCGCGGUCGuGaGCCacgaagaagUCGACGAGCUCg -3'
miRNA:   3'- uGUGCUGGCuCgCGG---------AGCUGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 50584 0.66 0.841924
Target:  5'- uGCGCGGCgGcuggguggccGGCGCCggggggaucgaGACGAGCUg -3'
miRNA:   3'- -UGUGCUGgC----------UCGCGGag---------CUGCUCGAg -5'
10803 3' -58.8 NC_002794.1 + 47972 0.66 0.835616
Target:  5'- -gGCGACCGccGCGCgCUCcuccgacccGACGAGCg- -3'
miRNA:   3'- ugUGCUGGCu-CGCG-GAG---------CUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 55209 0.66 0.835616
Target:  5'- gGCGCGGCgGAG-GCCggCGGuCGAGC-Cg -3'
miRNA:   3'- -UGUGCUGgCUCgCGGa-GCU-GCUCGaG- -5'
10803 3' -58.8 NC_002794.1 + 127367 0.66 0.835616
Target:  5'- gGCGCGGCCGcuCGUgUCGGCGgacGGCa- -3'
miRNA:   3'- -UGUGCUGGCucGCGgAGCUGC---UCGag -5'
10803 3' -58.8 NC_002794.1 + 116062 0.66 0.835616
Target:  5'- aGCGCGACUggggucgcgGAGCG-CUCGGCGcGGCg- -3'
miRNA:   3'- -UGUGCUGG---------CUCGCgGAGCUGC-UCGag -5'
10803 3' -58.8 NC_002794.1 + 186139 0.66 0.835616
Target:  5'- aGCACGGCCGucacgccuucCGCCUCGcCGGcCUCu -3'
miRNA:   3'- -UGUGCUGGCuc--------GCGGAGCuGCUcGAG- -5'
10803 3' -58.8 NC_002794.1 + 150967 0.66 0.83482
Target:  5'- cUACGACCu-GC-CCUCGgccggucuggacgACGAGCUCg -3'
miRNA:   3'- uGUGCUGGcuCGcGGAGC-------------UGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 194141 0.67 0.827577
Target:  5'- -aGCGGCCGcagcAGCGCC-CG-CGAGCc- -3'
miRNA:   3'- ugUGCUGGC----UCGCGGaGCuGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 125759 0.67 0.827577
Target:  5'- -gGCGGCCG-GCGgCUCGccacccggcuGCGAGCg- -3'
miRNA:   3'- ugUGCUGGCuCGCgGAGC----------UGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 58473 0.67 0.827577
Target:  5'- uGCACGAcccgcaguaccCCGAGCuCuucuaccugCUCGACGuGCUCg -3'
miRNA:   3'- -UGUGCU-----------GGCUCGcG---------GAGCUGCuCGAG- -5'
10803 3' -58.8 NC_002794.1 + 60009 0.67 0.827577
Target:  5'- -gGCG-CCGAGCGCaC-CGACcuGCUCg -3'
miRNA:   3'- ugUGCuGGCUCGCG-GaGCUGcuCGAG- -5'
10803 3' -58.8 NC_002794.1 + 52513 0.67 0.827577
Target:  5'- uCAUGGCCGuguaccuGUGUCUCGACGAacgggGCUa -3'
miRNA:   3'- uGUGCUGGCu------CGCGGAGCUGCU-----CGAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.