miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 3' -58.8 NC_002794.1 + 100912 0.67 0.819372
Target:  5'- uGCAUGGCCaAG-GUCUCGGCGcccgacuacaAGCUCa -3'
miRNA:   3'- -UGUGCUGGcUCgCGGAGCUGC----------UCGAG- -5'
10803 3' -58.8 NC_002794.1 + 138722 0.67 0.819372
Target:  5'- uCGCG-UCGAGcCGgCUCGACGGGgUCc -3'
miRNA:   3'- uGUGCuGGCUC-GCgGAGCUGCUCgAG- -5'
10803 3' -58.8 NC_002794.1 + 100797 0.67 0.819372
Target:  5'- uCGCGGCCGcuucuGCGCCUaCGugcCGGGCg- -3'
miRNA:   3'- uGUGCUGGCu----CGCGGA-GCu--GCUCGag -5'
10803 3' -58.8 NC_002794.1 + 118986 0.67 0.819372
Target:  5'- aGCACGuCCGGGCGCggggaGACGAGg-- -3'
miRNA:   3'- -UGUGCuGGCUCGCGgag--CUGCUCgag -5'
10803 3' -58.8 NC_002794.1 + 14926 0.67 0.819372
Target:  5'- nCGCGGucCCGAcGUGCuCUCGAUcGGCUCg -3'
miRNA:   3'- uGUGCU--GGCU-CGCG-GAGCUGcUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 148589 0.67 0.819372
Target:  5'- aGCACGGCCGGcCGCCgUCcACGGaCUCg -3'
miRNA:   3'- -UGUGCUGGCUcGCGG-AGcUGCUcGAG- -5'
10803 3' -58.8 NC_002794.1 + 145875 0.67 0.819372
Target:  5'- cCGCGACCGGaccGCGagaagCGGCGAGCg- -3'
miRNA:   3'- uGUGCUGGCU---CGCgga--GCUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 60931 0.67 0.818543
Target:  5'- cACACGGCCaucGGCcugcaccGCCugcUCGACGAGCg- -3'
miRNA:   3'- -UGUGCUGGc--UCG-------CGG---AGCUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 14983 0.67 0.814373
Target:  5'- gACGCGACCcggcagcagcuccucGGGCgGUCUCGGCuGGCUg -3'
miRNA:   3'- -UGUGCUGG---------------CUCG-CGGAGCUGcUCGAg -5'
10803 3' -58.8 NC_002794.1 + 11863 0.67 0.81101
Target:  5'- gGCgACGACCGccCGCCccgCGACGGGUccUCg -3'
miRNA:   3'- -UG-UGCUGGCucGCGGa--GCUGCUCG--AG- -5'
10803 3' -58.8 NC_002794.1 + 14579 0.67 0.81101
Target:  5'- gGC-CGACCGAagcGgGCCgUGGCGAGCg- -3'
miRNA:   3'- -UGuGCUGGCU---CgCGGaGCUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 105958 0.67 0.81101
Target:  5'- -aACGGCUGGGgGCCgccgCGgACGAGUUUc -3'
miRNA:   3'- ugUGCUGGCUCgCGGa---GC-UGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 44366 0.67 0.81101
Target:  5'- aGCGCGG-CGGGCGCgaCGuccGCGAcGCUCg -3'
miRNA:   3'- -UGUGCUgGCUCGCGgaGC---UGCU-CGAG- -5'
10803 3' -58.8 NC_002794.1 + 38565 0.67 0.81101
Target:  5'- aGCcCG-CCG-GCGCCUCGACgGAGUc- -3'
miRNA:   3'- -UGuGCuGGCuCGCGGAGCUG-CUCGag -5'
10803 3' -58.8 NC_002794.1 + 181472 0.67 0.81101
Target:  5'- cCGCG-CCGAGuCGCCaggcaGACGAGCc- -3'
miRNA:   3'- uGUGCuGGCUC-GCGGag---CUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 139372 0.67 0.802497
Target:  5'- aGCAgGACCuugaaGGUGCCcaaGACGGGCUUg -3'
miRNA:   3'- -UGUgCUGGc----UCGCGGag-CUGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 128339 0.67 0.802497
Target:  5'- gACGCggugGACUGAGCagucgacucgGaCCUCGgaACGAGCUCg -3'
miRNA:   3'- -UGUG----CUGGCUCG----------C-GGAGC--UGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 107529 0.67 0.802497
Target:  5'- -gACGGCCGgcgcGGCGCCggcggCGACGAccGCg- -3'
miRNA:   3'- ugUGCUGGC----UCGCGGa----GCUGCU--CGag -5'
10803 3' -58.8 NC_002794.1 + 181832 0.67 0.802497
Target:  5'- uCGCGGCCaGGUcCCg-GGCGAGCUCg -3'
miRNA:   3'- uGUGCUGGcUCGcGGagCUGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 147785 0.67 0.802497
Target:  5'- -gGCGACCcuGGGCGUCUCG--GAGCUg -3'
miRNA:   3'- ugUGCUGG--CUCGCGGAGCugCUCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.