miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 3' -58.8 NC_002794.1 + 23 0.68 0.77613
Target:  5'- aACACGAaaaCGAG-GCCgCcGCGGGCUCu -3'
miRNA:   3'- -UGUGCUg--GCUCgCGGaGcUGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 4848 0.67 0.802497
Target:  5'- uGCGCGGCCcacGUGCC-CGACGaAGCg- -3'
miRNA:   3'- -UGUGCUGGcu-CGCGGaGCUGC-UCGag -5'
10803 3' -58.8 NC_002794.1 + 10651 0.66 0.865994
Target:  5'- gGCGCGAgcccgaCGAGCGUCUgGAgccgccUGAGCUUc -3'
miRNA:   3'- -UGUGCUg-----GCUCGCGGAgCU------GCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 10964 0.66 0.843484
Target:  5'- gGC-CGGCCGAGaCGUC-CGAUGccuGCUCc -3'
miRNA:   3'- -UGuGCUGGCUC-GCGGaGCUGCu--CGAG- -5'
10803 3' -58.8 NC_002794.1 + 11863 0.67 0.81101
Target:  5'- gGCgACGACCGccCGCCccgCGACGGGUccUCg -3'
miRNA:   3'- -UG-UGCUGGCucGCGGa--GCUGCUCG--AG- -5'
10803 3' -58.8 NC_002794.1 + 12192 0.73 0.443336
Target:  5'- cCGCGGCCGGGCGCCgcUCGgACGuGC-Cg -3'
miRNA:   3'- uGUGCUGGCUCGCGG--AGC-UGCuCGaG- -5'
10803 3' -58.8 NC_002794.1 + 12908 0.68 0.748688
Target:  5'- gACugGGCCGAGUaccgccugGCCgUCGACGAcCUg -3'
miRNA:   3'- -UGugCUGGCUCG--------CGG-AGCUGCUcGAg -5'
10803 3' -58.8 NC_002794.1 + 13293 0.66 0.865994
Target:  5'- -gGCGGCaUGGGCGCUUCccccccgcccGGCGAGCg- -3'
miRNA:   3'- ugUGCUG-GCUCGCGGAG----------CUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 14579 0.67 0.81101
Target:  5'- gGC-CGACCGAagcGgGCCgUGGCGAGCg- -3'
miRNA:   3'- -UGuGCUGGCU---CgCGGaGCUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 14886 0.68 0.73934
Target:  5'- cCGCGAgCCGAgaccgaccuucGCGCUcgaUCGAgCGGGCUCg -3'
miRNA:   3'- uGUGCU-GGCU-----------CGCGG---AGCU-GCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 14926 0.67 0.819372
Target:  5'- nCGCGGucCCGAcGUGCuCUCGAUcGGCUCg -3'
miRNA:   3'- uGUGCU--GGCU-CGCG-GAGCUGcUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 14983 0.67 0.814373
Target:  5'- gACGCGACCcggcagcagcuccucGGGCgGUCUCGGCuGGCUg -3'
miRNA:   3'- -UGUGCUGG---------------CUCG-CGGAGCUGcUCGAg -5'
10803 3' -58.8 NC_002794.1 + 18275 0.68 0.73934
Target:  5'- uGCGCGgcGCCGAGC-CUUCGAacCGAGC-Cg -3'
miRNA:   3'- -UGUGC--UGGCUCGcGGAGCU--GCUCGaG- -5'
10803 3' -58.8 NC_002794.1 + 19607 0.7 0.666049
Target:  5'- -aGCGGCCGAGCcaccgaCUCGACGAagaccccagucggccGCUCu -3'
miRNA:   3'- ugUGCUGGCUCGcg----GAGCUGCU---------------CGAG- -5'
10803 3' -58.8 NC_002794.1 + 23934 0.66 0.858679
Target:  5'- -aGCGAuCCGAGCccgGCCgCGGCGcacuuGGCUCc -3'
miRNA:   3'- ugUGCU-GGCUCG---CGGaGCUGC-----UCGAG- -5'
10803 3' -58.8 NC_002794.1 + 24014 0.68 0.748688
Target:  5'- cGC-CGucACCGcGGCGCCUCGGCGAcgGCg- -3'
miRNA:   3'- -UGuGC--UGGC-UCGCGGAGCUGCU--CGag -5'
10803 3' -58.8 NC_002794.1 + 24193 0.72 0.50672
Target:  5'- gGCACcgaGACCGAGCGCggCGGCccGCUCa -3'
miRNA:   3'- -UGUG---CUGGCUCGCGgaGCUGcuCGAG- -5'
10803 3' -58.8 NC_002794.1 + 25522 0.66 0.865994
Target:  5'- gACGCuGACgGA--GCCUCGAUGAGC-Cg -3'
miRNA:   3'- -UGUG-CUGgCUcgCGGAGCUGCUCGaG- -5'
10803 3' -58.8 NC_002794.1 + 25742 0.71 0.603027
Target:  5'- cCACGACCGu---CCUCGAagcCGAGCUCg -3'
miRNA:   3'- uGUGCUGGCucgcGGAGCU---GCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 29764 0.76 0.317173
Target:  5'- cCGCG-CCGAGCGUCUCGGCc-GCUCg -3'
miRNA:   3'- uGUGCuGGCUCGCGGAGCUGcuCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.