miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 3' -58.8 NC_002794.1 + 31972 0.72 0.50672
Target:  5'- gUACGACgucuCGAGCGCCUCGgucugcguggGCGAGC-Cg -3'
miRNA:   3'- uGUGCUG----GCUCGCGGAGC----------UGCUCGaG- -5'
10803 3' -58.8 NC_002794.1 + 32377 0.69 0.671934
Target:  5'- gACGCGAuaGAuCGUCUUGACGAGCg- -3'
miRNA:   3'- -UGUGCUggCUcGCGGAGCUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 33036 0.67 0.785049
Target:  5'- cCGCGgaGCCGA-CGCCaUCGACGuGCUg -3'
miRNA:   3'- uGUGC--UGGCUcGCGG-AGCUGCuCGAg -5'
10803 3' -58.8 NC_002794.1 + 33742 0.68 0.767092
Target:  5'- uACACGacGCCGguGGCGCaccuguaCGGCGAGCUg -3'
miRNA:   3'- -UGUGC--UGGC--UCGCGga-----GCUGCUCGAg -5'
10803 3' -58.8 NC_002794.1 + 33856 0.68 0.757942
Target:  5'- aGC-CGGCaCGAGCucaacaGCCagcggaUCGugGAGCUCa -3'
miRNA:   3'- -UGuGCUG-GCUCG------CGG------AGCugCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 34280 0.72 0.525547
Target:  5'- -gGCGGCC-AGCGCCagCGACcggGAGCUCu -3'
miRNA:   3'- ugUGCUGGcUCGCGGa-GCUG---CUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 37775 0.77 0.305471
Target:  5'- -aGCGGCCGucgucgucggccgcaGGCGCCUCGACGAgacggucGCUCc -3'
miRNA:   3'- ugUGCUGGC---------------UCGCGGAGCUGCU-------CGAG- -5'
10803 3' -58.8 NC_002794.1 + 37936 0.8 0.190681
Target:  5'- cCGCGGCCGcccGUGCCUCGGCGAcucGCUCg -3'
miRNA:   3'- uGUGCUGGCu--CGCGGAGCUGCU---CGAG- -5'
10803 3' -58.8 NC_002794.1 + 38565 0.67 0.81101
Target:  5'- aGCcCG-CCG-GCGCCUCGACgGAGUc- -3'
miRNA:   3'- -UGuGCuGGCuCGCGGAGCUG-CUCGag -5'
10803 3' -58.8 NC_002794.1 + 41871 0.66 0.843484
Target:  5'- gGCAgGGCCGGGCGCUgccaCGccACGuagcGCUCc -3'
miRNA:   3'- -UGUgCUGGCUCGCGGa---GC--UGCu---CGAG- -5'
10803 3' -58.8 NC_002794.1 + 42603 0.68 0.767092
Target:  5'- -gGCGGCCggGAGCGggcucUCUCGACGAccgcGCUCu -3'
miRNA:   3'- ugUGCUGG--CUCGC-----GGAGCUGCU----CGAG- -5'
10803 3' -58.8 NC_002794.1 + 44160 0.66 0.858679
Target:  5'- uGCACGugCacGGCGCgagCGGCG-GCUCg -3'
miRNA:   3'- -UGUGCugGc-UCGCGga-GCUGCuCGAG- -5'
10803 3' -58.8 NC_002794.1 + 44366 0.67 0.81101
Target:  5'- aGCGCGG-CGGGCGCgaCGuccGCGAcGCUCg -3'
miRNA:   3'- -UGUGCUgGCUCGCGgaGC---UGCU-CGAG- -5'
10803 3' -58.8 NC_002794.1 + 44423 0.69 0.691463
Target:  5'- -gGCG-CCGAGCGgCUCGACGAcaccgGCg- -3'
miRNA:   3'- ugUGCuGGCUCGCgGAGCUGCU-----CGag -5'
10803 3' -58.8 NC_002794.1 + 45890 0.7 0.612865
Target:  5'- uGCcCGACCGAGCcccgcccgccGCCggcaccgggCGACGAGgCUCg -3'
miRNA:   3'- -UGuGCUGGCUCG----------CGGa--------GCUGCUC-GAG- -5'
10803 3' -58.8 NC_002794.1 + 46372 0.76 0.33864
Target:  5'- cCACGcucuCCGGGCGCgCUaCGACGAGCUg -3'
miRNA:   3'- uGUGCu---GGCUCGCG-GA-GCUGCUCGAg -5'
10803 3' -58.8 NC_002794.1 + 47972 0.66 0.835616
Target:  5'- -gGCGACCGccGCGCgCUCcuccgacccGACGAGCg- -3'
miRNA:   3'- ugUGCUGGCu-CGCG-GAG---------CUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 48498 0.69 0.719436
Target:  5'- cCACGACaCGuucAGCGCCcgaUCGACGuacagcacgcacaGGCUCg -3'
miRNA:   3'- uGUGCUG-GC---UCGCGG---AGCUGC-------------UCGAG- -5'
10803 3' -58.8 NC_002794.1 + 49607 0.66 0.858679
Target:  5'- -gGCGACggCGGGCGCCggCGGCGc-CUCg -3'
miRNA:   3'- ugUGCUG--GCUCGCGGa-GCUGCucGAG- -5'
10803 3' -58.8 NC_002794.1 + 50414 0.66 0.858679
Target:  5'- gGCACaGACCGAGC-CCUCcGCGguGGC-Ca -3'
miRNA:   3'- -UGUG-CUGGCUCGcGGAGcUGC--UCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.